Lobt036815.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophora obtusa
Gene Symbol
-
Assembly
GCA_949987735.1
Location
OX465297.1:157369556-157384957[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.013 1.4 11.3 0.8 2 23 16 38 15 38 0.93
2 27 0.00064 0.068 15.4 0.1 1 23 44 66 44 66 0.99
3 27 0.023 2.4 10.5 4.3 2 20 74 92 73 95 0.92
4 27 2.6 2.8e+02 4.0 3.0 1 23 101 123 101 123 0.97
5 27 0.0033 0.35 13.1 1.8 2 23 245 267 244 267 0.93
6 27 0.051 5.4 9.4 0.2 1 23 273 295 273 295 0.98
7 27 3.6e-07 3.8e-05 25.6 4.1 1 23 302 324 302 324 0.98
8 27 0.069 7.3 9.0 4.1 3 23 331 351 330 351 0.97
9 27 0.0086 0.92 11.8 2.1 2 23 425 447 424 447 0.96
10 27 0.17 18 7.8 0.6 1 23 453 475 453 475 0.96
11 27 0.0036 0.38 13.0 1.4 1 21 482 502 482 503 0.96
12 27 0.00096 0.1 14.8 3.2 1 23 510 532 510 532 0.99
13 27 0.045 4.7 9.6 0.5 2 23 552 574 551 574 0.93
14 27 0.00025 0.026 16.7 0.2 1 23 580 602 580 602 0.96
15 27 0.38 40 6.7 1.4 1 23 609 631 609 631 0.98
16 27 0.0008 0.085 15.1 7.7 1 23 637 659 637 659 0.96
17 27 0.011 1.2 11.5 0.9 2 23 688 710 687 710 0.94
18 27 0.055 5.9 9.3 0.3 1 23 716 738 716 738 0.96
19 27 0.0089 0.94 11.8 0.2 8 23 752 767 747 767 0.95
20 27 0.0042 0.44 12.8 1.0 1 23 925 947 925 947 0.95
21 27 0.12 13 8.3 0.8 4 23 954 973 954 973 0.97
22 27 0.33 35 6.9 1.3 2 23 988 1010 987 1010 0.93
23 27 0.0033 0.35 13.2 1.4 1 23 1016 1039 1016 1039 0.97
24 27 0.0006 0.063 15.5 2.0 1 23 1326 1349 1326 1349 0.94
25 27 0.079 8.3 8.8 0.3 2 23 1565 1587 1565 1587 0.95
26 27 0.011 1.1 11.6 0.9 1 23 1593 1615 1593 1615 0.99
27 27 6.2 6.6e+02 2.9 0.0 6 21 1627 1642 1627 1643 0.95

Sequence Information

Coding Sequence
ATGACACAAAGACCCGCTCTTAATATGCAACGAGCTCTGGATATCAAATGTACCGTATGTCAACAgaaATTTAAATATCGGCTTGAATTAATTAAGCATGCTCAGCTAAATCATCCCAATGATAAAGTTTTTAAGTGTGACATTTGTTCTTTGACTTTTGCCAATGTAATATCACTATTACTTCATATTAGAATTCACAAATTTCCATCAAATAGAGTTTCATGTAAATTATGTTACAAGTCCTTTTCACACAACCATTATCTTAAATTACACTTATGGAGACATGCTGCAGAAAGACGCTACTATTGTTTTGTATGTGAAACATCATATAAATGCATAGATTCTTTGACGAAACATAAAGAAATTCATTTGGAAAACCATGCCAATGATGAATCTACAGATTTATATTgtcaaattaaagaaatcgAAAGTTTACAGAATTTTCTAGACATAAAACAGAAACCTAATTTAAACATTGACCCActaaatacaaaaacaaaacacatAGATGAAAAACAAGTAAACAGCgatacaaaaatatgtaaaaatttcACAACAGAAGAATATGATCAGTTGGAAGATAATACCAGTACGAATGACTCCCAACATATACAAACGCCAGATGATGATAATGATAACTTTATATTGGATGcaaatgatgatgatgacgataaCTTTATTTTAGAAAAAGAACCAAGGCGAAAAACATGTCGGATGTCGGCTGTAGACTCGAAATGTGCTATATGTCATAAGGAATTTAAATATCGCTTTGAACTCGTTAGACATGCTCAGCTCAATCATCCAAATGATAAAGCATTCAAATGTGGCAATTGTTCCATGGTTTTTGCCAATGTAGTTTCAATATCACGTCATAGTAGAGTACACAAATTTTCCAAAATGAGATTTTCATGTAAAATATGTTCCAAGTCATTTTTCCGAAAAGATAATCTAAAACGTCATTTGAGGACACACACAAATGAACGACCTTATTGTTTTGTGTGTAAAACATCCTTTAAATGCAAAGATTCTTTGGAGAAGCATTTGAAAATTCATTTCAAAGGCAATACGAATGAAGACACTACAGATTTAGATTGCCAAAATAATGACAACGGAAACCACAATTCAGAAGCTGTTCATTTAAAAGATAGTTCTAACATTAATTATACTAAACCAATAGAAATGTCGGAGGATAACGATGATGACCTTATACTGGAAGAAAATTCAAATCaaccaaaaagaaaaaaattaagaacCATATCAGTAGTGGATACAAAATGTGGAGTTTGTCATAAGGAATTTAAATATCGATTAGAGTTAATTAATCATGCTAAACGGAATCATCCTGGTGCTAAAGTTTTTAAATGTAGCATTTGTTCTATGGGATTTTCCAAGTATAATGCCATACCACGTCATCGTAGAATTCATAATGATATCGGAAAGGAATACGTTTGTGAATATTGTTCGAAATCCTTTTTAAACCGATTTACTTATAAGCGTCACATGAACGTTCGTACATGCAAAAAAGAGTATACCTGTTCTTTCTGTGATAAATcgtataaacaaaaattatcTTTCGATAATCATCTAAATACCCACTTAGGAAAAGAAAAGAAACGAAGACGTATTCTAAAAAAAGAAAGAGCTATTGAAACAAAATGTGCTGTATGTCAACAGGAATTTAAATATCGTCAAGATTTTATAAAGCATGCTCAGCTTGTACATTCCACCGATAAAGTGTTTAAATGTGGTATTTGCCCtatggtttttaaaaatatcagcTCATTATTGAATCATCAAACAGATCACAAAAAATTGCCGACGAAATATGTTTGCACATTTTGTCCCAATTCCTATAGAGTAAAACAGAAACGCGATCAGCATATGAAAGTACATAGTACAGAACGTTGCCACGCATGTTCTTTGTGTGATAAATCCTATAAACACAAACACTTATTAGAAAAACACCAAAAGAGCCACTTAAAAGGCGTATCGGAAAATAAAGAGGCAAAAGTTAAAAGTTCACGAAGATACCCTGTTAAAATACAACAAGCTGCGGAAATGAAATGTGCCATATGTCAACAGAAATTTAAATATAGTTTTGAACTTGTTAAACATGCTCAGCAAAATCATCCAAATGATAAAGCATTTAAATGCAGCAATTGTTCTATGGCTTTTGTCAATGTATTATCATTATCACGTCATAGTGAAGTTCACGAAGATTCCCAAACTAAATTTTTGTGTGAAATTCGTTCCAAGTCATATAAACGCCAAGATGAACTTAAAGCTCATTTAAGAACACACACTAACGAACGTAAAACAACATGTACCCGAACCCGTTCAAGGACTaaagaaaaaagagattgtgaaaataaaaaaccaaaaagtTTACAGATACCGTACATTGAGTCTcaaaatatattgaaaataaaatcAAACCTTAAAATAAGTCAAAAAGGTGATCGATTGGAAGATTTTTATAATACTAATGCTTCCCAACAAATAAAAATGGTggatgatgatgatgataaCATGGCAGAAGAACTAAATACGGATTATATTTCAAAACAAGTAGAAAATAAGGAAGAAAATATGAGCAGAAAAGATAAGAATTTAGAGAATAGTATAGATGACGAGTCTTTATTAGAAGAACTAACAAATCCTTCCAATACCAAGTTAGTTCCGGAAACAAAATGTGGAATGTGTCATAAgGAATTTTATTGCCATAAAGATCTAATTGAACATGTTACACAAAACCATTCAAATGCTAAAGCTTTTAAATGTAATATTTGCTTTAAACTTTTTAGCAATGTCTACTCCTTAGCCAAACATGGAAGCCTACATAAAAATTTACCAGAGAAACATATATGTTCCAAAGCTATTGTGAATTCAAACGAATTTACACGACACCTAAAGACACACGCAAAACATTCAACTCATAATGACCGAAGAGCTGCTGACAAAAGATGTGGAGCTTGTCGTAAgAAATTTCAATATCGTCGAGATCTTGTTAAACATGTCAATGAATATCATCCAAATACTAAAGCATTTAAATGTAATCTTTGTCCgatggtttttaaaaatttggatTATATCTCAACTCATCGAAGATATACACATAAACTTAAGCCAAAGAAATACTTTTGTGAAATATGTTCATGTTACCTTAGAGACAAAAACTGTTATAAAATTCACTTACAAAGTATTAAACATAAAACTTCTTTGAAGCACCATGAAGATCTCTCCAATGAAGAAGTTAAAAGTATATTAAGTGAAATTATAATTTCCGATGATGAAAATGAAGAAATCTTTTTGGAAAATCatcaaaaattactttcaaaaCAGAAATCAAATAAAGGTTTTAAGGATCATTTAAGAAAAACTACGAGTATAATTTGTAATGATACACATAAAGAAAAGCAAAGTTTAAGTAATTCTGTTATTAAAAAAGAACTTGTTATGGATTTTGAATCTGACGAAGTTCAAGATGTTACAGAGATAACTAAAACAGACTTTGTATATGATGAGGCCATTCCTAATACTGCTATAAGAGTAGACAATATAATTTCCGATGATGAAAATGAAGAAATCTTTTTGGAAAATCATCAAAAATTACTGTTAAAACAGAAATCAAATAAAGGTTTTAAGgataatttaagaaaaactatAATTTACAATGATACGCATAAAGAAAATCAAAGTTTAAGTAATTCTGTTATTAAGAAAAAACTTGTTATGAATTTTGAATCTGACGAAGATCAGGATGTTATAGAGATAACTAAAACTAAATTTAGGACCAATAATAATACTGCTATAAGAGTAGACTACAATTGTAGCACAATAAATGATACAACAACAatgaacaaaaatatttcaaaagaGTTGTCAAATCCACATGTTTGTAGATTATGTCTTGAATCTTTTACTTGCATCATGAACTTGAAAATTCACTCACTTACACATATAAAAGAATTTCCCTTCTTGTGTTCTTTTTGTAACAGACGTTTTAAGAGTAATGATAGTTTGATTACTCATCAAACAAGAATTCACTCTGATCATTTGAGTTCCTTGATGAAAAATGTAGATGACGGAACAAATAATAGGATGTTAAACCATGAAGAAATGTTGGAAATTACAAATTGTTCTAACGATAATACTGTAATGGAAACAATAGAAGACCAATTTAGAGAAAAACATTCCAAAGGTCTTAATAATCAGGATAACCTTATAAACAATGAAAAACCTACAAGTTCAGTTTTTATGTTTCAAAAAGATGCTGAACATTTGCAAAACTCTAACGAAATTCAATGCCTTAATCATACTCCTTATATTGAAGAAGAAGAATCTTATTCGGATAATGTTTTAGAAACATCTAAAACTAAatatatacataatgaaataATGAATTTTGAAATTAGCGATGATAGCCAGAGCATTAAAGAGTCAACGACAACTCATAGTGAAAGTTCAAAAGACTCTTGGGATAAATCTATAGATGTTAGAGTATTTCAAGAAGAATTTCTGTTACAccattttcaaaatactgaaaaaGAAAAAGATTTGGCTAACGAACCTTTATGTAATGTGACAACtatatataaaatgaataaGTTAGCAAAAGATCCAAATTGTGAAATTGATGAAAGAATAAAATGTCGACAAACCGTTGCTAAATGTAATATAGGTGTTGAACGAAAATGTGCAGTTTGCCAAGAGGAGTTTAATTATCGTCTGGATCTTATAAAGCATGTTCAACAGTATCATCGAAATGTTAAGGCATTTAAATGTAGTCTTTGTCCTATGCTTTTTACAGACGTTAAGTCCATAATACGTCATCGAAGAAGACATGAAGAATTGCCCACGGCAAAGGCTTTTCCTTGTTGTCCTGAGACTTTTAATCGGATGGATTACTTTATGGAGCATTTAAAGCAATCTGGTTTTCTAAGTTATTTATCACGTCGTGGTTTAAAAAAAGAGGTTAAAGTTAAGAAATGTCGTGTTTTAAAAAGTCTAGATTGA
Protein Sequence
MTQRPALNMQRALDIKCTVCQQKFKYRLELIKHAQLNHPNDKVFKCDICSLTFANVISLLLHIRIHKFPSNRVSCKLCYKSFSHNHYLKLHLWRHAAERRYYCFVCETSYKCIDSLTKHKEIHLENHANDESTDLYCQIKEIESLQNFLDIKQKPNLNIDPLNTKTKHIDEKQVNSDTKICKNFTTEEYDQLEDNTSTNDSQHIQTPDDDNDNFILDANDDDDDNFILEKEPRRKTCRMSAVDSKCAICHKEFKYRFELVRHAQLNHPNDKAFKCGNCSMVFANVVSISRHSRVHKFSKMRFSCKICSKSFFRKDNLKRHLRTHTNERPYCFVCKTSFKCKDSLEKHLKIHFKGNTNEDTTDLDCQNNDNGNHNSEAVHLKDSSNINYTKPIEMSEDNDDDLILEENSNQPKRKKLRTISVVDTKCGVCHKEFKYRLELINHAKRNHPGAKVFKCSICSMGFSKYNAIPRHRRIHNDIGKEYVCEYCSKSFLNRFTYKRHMNVRTCKKEYTCSFCDKSYKQKLSFDNHLNTHLGKEKKRRRILKKERAIETKCAVCQQEFKYRQDFIKHAQLVHSTDKVFKCGICPMVFKNISSLLNHQTDHKKLPTKYVCTFCPNSYRVKQKRDQHMKVHSTERCHACSLCDKSYKHKHLLEKHQKSHLKGVSENKEAKVKSSRRYPVKIQQAAEMKCAICQQKFKYSFELVKHAQQNHPNDKAFKCSNCSMAFVNVLSLSRHSEVHEDSQTKFLCEIRSKSYKRQDELKAHLRTHTNERKTTCTRTRSRTKEKRDCENKKPKSLQIPYIESQNILKIKSNLKISQKGDRLEDFYNTNASQQIKMVDDDDDNMAEELNTDYISKQVENKEENMSRKDKNLENSIDDESLLEELTNPSNTKLVPETKCGMCHKEFYCHKDLIEHVTQNHSNAKAFKCNICFKLFSNVYSLAKHGSLHKNLPEKHICSKAIVNSNEFTRHLKTHAKHSTHNDRRAADKRCGACRKKFQYRRDLVKHVNEYHPNTKAFKCNLCPMVFKNLDYISTHRRYTHKLKPKKYFCEICSCYLRDKNCYKIHLQSIKHKTSLKHHEDLSNEEVKSILSEIIISDDENEEIFLENHQKLLSKQKSNKGFKDHLRKTTSIICNDTHKEKQSLSNSVIKKELVMDFESDEVQDVTEITKTDFVYDEAIPNTAIRVDNIISDDENEEIFLENHQKLLLKQKSNKGFKDNLRKTIIYNDTHKENQSLSNSVIKKKLVMNFESDEDQDVIEITKTKFRTNNNTAIRVDYNCSTINDTTTMNKNISKELSNPHVCRLCLESFTCIMNLKIHSLTHIKEFPFLCSFCNRRFKSNDSLITHQTRIHSDHLSSLMKNVDDGTNNRMLNHEEMLEITNCSNDNTVMETIEDQFREKHSKGLNNQDNLINNEKPTSSVFMFQKDAEHLQNSNEIQCLNHTPYIEEEESYSDNVLETSKTKYIHNEIMNFEISDDSQSIKESTTTHSESSKDSWDKSIDVRVFQEEFLLHHFQNTEKEKDLANEPLCNVTTIYKMNKLAKDPNCEIDERIKCRQTVAKCNIGVERKCAVCQEEFNYRLDLIKHVQQYHRNVKAFKCSLCPMLFTDVKSIIRHRRRHEELPTAKAFPCCPETFNRMDYFMEHLKQSGFLSYLSRRGLKKEVKVKKCRVLKSLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-