Lobt019209.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- Zbtb41
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:19620839-19630349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.01 1.1 11.6 6.9 1 23 8 30 8 30 0.96 2 23 0.0029 0.31 13.3 2.6 1 23 36 58 36 58 0.98 3 23 0.11 12 8.3 6.8 1 23 64 86 64 86 0.98 4 23 0.0074 0.78 12.1 2.2 1 23 94 116 94 116 0.96 5 23 0.1 11 8.5 4.8 1 23 122 144 122 144 0.97 6 23 0.00093 0.098 14.9 4.7 1 23 152 174 152 174 0.99 7 23 0.0013 0.14 14.4 7.5 1 23 180 202 180 202 0.98 8 23 0.0094 1 11.7 4.9 1 23 210 232 210 232 0.96 9 23 0.00087 0.092 15.0 2.0 1 23 237 260 237 260 0.98 10 23 0.00021 0.022 16.9 4.6 1 23 268 290 268 290 0.98 11 23 0.066 7 9.1 0.7 1 12 296 307 296 309 0.92 12 23 0.01 1.1 11.6 6.9 1 23 347 369 347 369 0.96 13 23 0.0018 0.2 13.9 2.5 1 23 375 397 375 397 0.98 14 23 6.9e-05 0.0074 18.4 3.5 1 23 403 425 403 425 0.97 15 23 0.38 40 6.7 4.3 1 23 433 455 433 455 0.96 16 23 0.032 3.4 10.0 2.9 1 23 461 483 461 483 0.97 17 23 1.9e-05 0.002 20.2 3.2 1 23 486 508 486 508 0.99 18 23 0.53 56 6.2 9.4 1 23 514 536 514 536 0.94 19 23 0.0052 0.55 12.5 2.7 1 23 544 566 544 566 0.95 20 23 0.0013 0.13 14.5 2.3 1 23 572 595 572 595 0.98 21 23 7.9e-05 0.0084 18.3 7.3 1 23 603 625 603 625 0.98 22 23 0.0072 0.76 12.1 2.5 1 23 631 653 631 653 0.97 23 23 3.1e-06 0.00033 22.7 1.5 2 23 664 686 663 686 0.96
Sequence Information
- Coding Sequence
- ATGGGAGAATCTGCAAAAATCCACAATTGTCAACATTGTGAAAAGAAATTTTTCGATCGTTCTCGTTTAAAAGCCCACACAAAACTCCATACTAGTGTAAAACTTTATGAATGCGAATACTGTGAAAAGAAGTTTGTATATGGTTGTCGCCTAAAAGTACACATTAATAGACATACTGTCGAAAAACGTTATAAATGTGATGTTTGTCCTAAACATTTTTCATGTCAAAACTATTTAAATTACCACAAAAAATTGCATATGGGAGAATCGGCAAAAATGCATAATTGTCAACAGTGTGATATGAAGTTTCTATTTGCTTCTAACTTAAAGAAACACGTGATGGTTCATACTGGAGAAAAACCATTTGAATGTGATATATGTCACAATCGTTACCGGGTTAAATATAGTTTAGATCATCACAAGCAGCTGCATTTGAAAGAATctgaaaataattttcaatgCAAACATTGTGAGCATAAACTTTCTAGTGATTCGGATTTAAGAATTCACCTTAGAACACACGCTGGCGAAGGGCCTTTTCAATGTGATATATGTCATAAACGTTTTCACACTAGCAAGTATTTAACATCTCACAAAATCAAACATACGGGGGAAGCTGGAAGAGTTCATAGTTGTGAACATTGTGATAAGAAATTTTTTCTTAGAGCTGAATTAATAAAGCATGCACATGTTCACACCGGCTTGCCATATAAATGCGATATATGCTATTACCGTTTTCAAACTCCTGAAAGACTTAGTAATCACCAAAAGAAACTACATATCGGTAAAGTTGAACGGACTTTTAATTGCGAACATTGTGATAAGAAATATAAACGTAAGGCGGACCTTCAATTCCATTTACGTACTCACACTGGCGAAAAACCCTATAAATGTGAGATATGTCACAAACATTTTGCACGTGGTTCAATTTTACCATCTAAAAATCCTGAATTCGAATGTCAAATATCTCACAAACGTTTAAAATTGAGAAGCCTAACCAAGCACAGAAAGATACATATGGGAGAATCTGCAAAAATCCACAATTGTCAACATTGTGAAAAGAAATTTTTCGATCGTTCTCGTTTAAAAGCCCACACAAAACTCCATACTAGTGTAAAACTTTTTGAATGCGAATACTGTGAAAAGAAGTTTGTATATGGTTGTCGCCTAAAAGTACACATTAATACACATACAGTCGAAAAACGTTATAATTGTGAAGTTTGTCCCAAACATTTTTCATCTCAAAGCTATTTAAATTACCACAAAAAATTGCATATGGGAGAATCGGCAAAAATGCATAATTGTCAACAGTGTGATAAGAAGTTTCTATGTGCTTCTGACTTAAAGAAACACGTGATGGTTCATACTGCAGAAAAACCATTTGAGTGTGATATATGTCACAATCGTTACCGGGCTAAATATAGTTTAGATCGTCACAAGCAGCTGCATTTGAATTTTCAATGCAAACATTGTGAGCAGAAACTTTCTAGTAATTCGGATTTAAGAATTCACCTTAGAACACACGCTGGCGAAGGGCCTTTTCAATGTGATATATGTCATAAACGTTTTCACTCTAGCAACTATTTAAAATGCCACAAAATCAGACATACGGGGGAAGCTGGAAGAGTTCATAGTTGTGAACATTGTGATAAGAAATTTTTTCTTAGAGCTGACTTAATAAATCATGCATATATTCACACCGGCGGGTTGCCTTATAAATGCGATATATGCTATAGACGTTTTCAAACTGTTGAAAAACTTAGTAATCACCAAAAGAAACTACATATCGGACAAGTTGAACGGACTTTTAATTGTGAACATTGTGATAAGAAATATAAGCGTAGTTGTGACCTTAAACTCCATTTACGTACTCACACTGGCGAGAAACCCTATAAATGTGAGATATGTCACAAACATTTTGCACGTGGTTCAATTTTAGTTGTTCACAAAAAGATACATACTCGTACAAGCgttaaaagaaaaactttaacATGTGAATATTgtgataaaaaatttaaacgAAAACCAGGGCTTCGAAAGCACATACTAAAGACACATACTAAAGAAACCCCGAAGCAATCATAA
- Protein Sequence
- MGESAKIHNCQHCEKKFFDRSRLKAHTKLHTSVKLYECEYCEKKFVYGCRLKVHINRHTVEKRYKCDVCPKHFSCQNYLNYHKKLHMGESAKMHNCQQCDMKFLFASNLKKHVMVHTGEKPFECDICHNRYRVKYSLDHHKQLHLKESENNFQCKHCEHKLSSDSDLRIHLRTHAGEGPFQCDICHKRFHTSKYLTSHKIKHTGEAGRVHSCEHCDKKFFLRAELIKHAHVHTGLPYKCDICYYRFQTPERLSNHQKKLHIGKVERTFNCEHCDKKYKRKADLQFHLRTHTGEKPYKCEICHKHFARGSILPSKNPEFECQISHKRLKLRSLTKHRKIHMGESAKIHNCQHCEKKFFDRSRLKAHTKLHTSVKLFECEYCEKKFVYGCRLKVHINTHTVEKRYNCEVCPKHFSSQSYLNYHKKLHMGESAKMHNCQQCDKKFLCASDLKKHVMVHTAEKPFECDICHNRYRAKYSLDRHKQLHLNFQCKHCEQKLSSNSDLRIHLRTHAGEGPFQCDICHKRFHSSNYLKCHKIRHTGEAGRVHSCEHCDKKFFLRADLINHAYIHTGGLPYKCDICYRRFQTVEKLSNHQKKLHIGQVERTFNCEHCDKKYKRSCDLKLHLRTHTGEKPYKCEICHKHFARGSILVVHKKIHTRTSVKRKTLTCEYCDKKFKRKPGLRKHILKTHTKETPKQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -