Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465299.1:139715752-139717419[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0013 0.14 14.4 2.1 1 23 89 112 89 112 0.96

2 12 0.00064 0.067 15.4 2.6 2 23 115 136 114 136 0.97

3 12 1.3e-05 0.0014 20.7 0.2 1 23 143 165 143 165 0.99

4 12 9.9e-08 1.1e-05 27.4 0.6 1 23 171 193 171 193 0.99

5 12 0.00016 0.017 17.3 2.0 1 23 200 222 200 222 0.98

6 12 6e-06 0.00064 21.8 1.8 1 23 228 250 228 250 0.97

7 12 5.4e-05 0.0058 18.8 0.2 1 23 256 278 256 278 0.97

8 12 1.7e-05 0.0018 20.3 0.4 1 23 284 307 284 307 0.97

9 12 0.0023 0.24 13.7 2.4 1 23 313 336 313 336 0.95

10 12 1.3e-05 0.0013 20.8 1.2 1 23 342 364 342 364 0.98

11 12 0.00016 0.017 17.3 0.5 1 23 370 392 370 392 0.96

12 12 0.0018 0.19 14.0 0.2 1 22 398 419 398 422 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0013	0.14	14.4	2.1	1	23	89	112	89	112	0.96
2	12	0.00064	0.067	15.4	2.6	2	23	115	136	114	136	0.97
3	12	1.3e-05	0.0014	20.7	0.2	1	23	143	165	143	165	0.99
4	12	9.9e-08	1.1e-05	27.4	0.6	1	23	171	193	171	193	0.99
5	12	0.00016	0.017	17.3	2.0	1	23	200	222	200	222	0.98
6	12	6e-06	0.00064	21.8	1.8	1	23	228	250	228	250	0.97
7	12	5.4e-05	0.0058	18.8	0.2	1	23	256	278	256	278	0.97
8	12	1.7e-05	0.0018	20.3	0.4	1	23	284	307	284	307	0.97
9	12	0.0023	0.24	13.7	2.4	1	23	313	336	313	336	0.95
10	12	1.3e-05	0.0013	20.8	1.2	1	23	342	364	342	364	0.98
11	12	0.00016	0.017	17.3	0.5	1	23	370	392	370	392	0.96
12	12	0.0018	0.19	14.0	0.2	1	22	398	419	398	422	0.92

Sequence Information

Coding Sequence: ATGTTTACAAGCAAAGGACATCGTGGAGATAATTCACAACAGCCAGACATTGTTGAATTTGTATTATCAAATGAACAACAGGTAACTGATACCCATGCTGATCCTTCACCATCACCACCACTTCCAAGTTCTGGCGCCACAACCCCTAAACCTGTATGTAAACAACAAGGAATTGTATTCATATGTTTTTTATGTGAGATTTCACCACAATTTGAACGTCAGACACTAATAGATCACTTTCAAACCTTTCATAAATCAAAATTCTATATGTGTGAACATTGTCATGAGGGATATGCTCGGCGACAAGATCTTAAAATGCACACAGAAAGTGGTCATTTCACGCGGTGTGAATTTTGTGATCAAACATTTACCAGTAATCGTCTGTATCGCATGCATAAGCGAATTCATTACAATACCTCCAAGCCTTACGAATGTTCGGTGTGTCAGAAAACGTATGTATCCAAGGGAGTGCTGGAAGAACATATGAATACACATACCGGTGTTAGGCCATATAAATGTCCCGAATGTCCAAAGGATTTTGCGTCAAAATACACACTACAAACTCATATGAAAATACATAAAGAACGTCCAAGACCATATCAGTGCGATCAGTGTGGTAAACagtttttaaatcaacaaaatCTAAATCAACACAAAAAGTTACATGTCTCGGTAAAAGCTTTCGAATGTGATGTCTGCTCGAAAACCTTCACTACACAACATAGTCTACAGGTACATAAAATAGTACATTCCGGCCAAAGACCTTTTATATGTCGTATTTGTGGAAAATCTTTTGCCCGGAGACCAGAAATAAAAGATCATGAACGCATTCATACTGGTGAGAGACCATTCCAATGTGATTTATGTCCCATGGCATTTGCTCAGCGTTCAAATTTGGCCACTCACAAGAAGTCGACGcatttaaatgaaaaaatacACAAATGTGATCAATGCTTGCGATCGTTTAAACGTAAACGTTTATTGGACTATCATATACAGGCAATTCACACTGGAGAACGTCCACATAAATGCGAAATTTGTGGCGCTGGATTTGTCTATCCTGAACATTATAAAAAACACATGCTCATACACAGTGGAAAGAAACCATTTGCCTGTGAAGTGTGTGGCAAGCAATTTAATAGTCGTGACAATCGTAATGCTCATCGTTTTGTTCATAGTGATAAAAAGCCCTACGAGTGTATGGAATGTGGGGCAGGCTTTATGCGTAAGCCTTTGCTGTTGACACACATGAAACAGACGAAACATGTTAACGACACGATCATTATTAATCAACCACAGTTTACCCAACATCAACCTATGGAAAGTTCGACTGcaaatacaaatataaaaagTGAAATGGATGAAAATGAAATTGATGTTGATAATGATTTAGAGCCAAGGGAAGATGAGGCTGAAGAGTCACTTGAGACTATTATGTTCAAAGCTCAAGAACTTTTGAGTAAAAGTGCTTCATCAGTATCATCGCCCCTTATTGAAGATGAGGAGGAGGAGACGATTGAAGTTAATGAGAATATTATTACTTCAGTAAGTGATCATTTGATAAAAGTCGAATTAGGTGATGTCAAATATTTACAATTTGAAGATTTAGATCGCGATGGTCATCAAACATTGACGTGGGTCGATATAGGAGGAAATGATAAAGTTTAA
Protein Sequence: MFTSKGHRGDNSQQPDIVEFVLSNEQQVTDTHADPSPSPPLPSSGATTPKPVCKQQGIVFICFLCEISPQFERQTLIDHFQTFHKSKFYMCEHCHEGYARRQDLKMHTESGHFTRCEFCDQTFTSNRLYRMHKRIHYNTSKPYECSVCQKTYVSKGVLEEHMNTHTGVRPYKCPECPKDFASKYTLQTHMKIHKERPRPYQCDQCGKQFLNQQNLNQHKKLHVSVKAFECDVCSKTFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGERPFQCDLCPMAFAQRSNLATHKKSTHLNEKIHKCDQCLRSFKRKRLLDYHIQAIHTGERPHKCEICGAGFVYPEHYKKHMLIHSGKKPFACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHVNDTIIINQPQFTQHQPMESSTANTNIKSEMDENEIDVDNDLEPREDEAEESLETIMFKAQELLSKSASSVSSPLIEDEEEETIEVNENIITSVSDHLIKVELGDVKYLQFEDLDRDGHQTLTWVDIGGNDKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -