Lobt029488.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophora obtusa
Gene Symbol
-
Assembly
GCA_949987735.1
Location
OX465297.1:8067879-8077171[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00018 0.019 17.1 0.9 2 23 166 187 165 187 0.96
2 15 0.0075 0.79 12.0 2.5 1 21 193 213 193 214 0.93
3 15 0.48 51 6.3 5.7 1 21 283 303 283 304 0.95
4 15 4.2e-06 0.00044 22.3 1.0 2 23 316 338 315 338 0.94
5 15 2.7e-05 0.0029 19.7 3.7 1 23 426 448 426 448 0.98
6 15 0.0034 0.36 13.1 3.1 1 23 454 476 454 477 0.95
7 15 0.015 1.6 11.1 0.3 1 23 497 520 497 520 0.95
8 15 6e-06 0.00064 21.8 1.9 1 23 526 548 526 548 0.99
9 15 3.6e-06 0.00038 22.5 2.4 1 23 554 576 554 576 0.99
10 15 2.1e-07 2.2e-05 26.4 1.8 1 23 582 604 582 604 0.96
11 15 0.014 1.4 11.2 4.1 1 23 610 632 610 632 0.97
12 15 0.0011 0.12 14.6 2.7 1 23 638 660 638 660 0.97
13 15 5.7e-07 6e-05 25.0 0.3 1 23 666 688 666 688 0.99
14 15 2.6e-06 0.00027 22.9 1.7 1 23 694 716 694 716 0.99
15 15 0.013 1.4 11.3 0.1 1 19 722 740 722 741 0.97

Sequence Information

Coding Sequence
ATGTTAATACATGAAATATATGGTCGCGTGTGCCGCGTGTGTATGTGCAAAGCTAATAATTTACATGATTTAAATGAGACCACCGAAGAATGTCTCACCATGAATGAAATGCTGGTGAAAACTGTCTCCGGCATACAGGCCAACATTGAATTTCCAGTGCCTCAAGAAATATGTGATTTATGCATTGAACATTTACAAATATCATTTAGATTTCAACAATTATGTACGAATACCACTGaacaaatgtttaaaatatggGAGCAGTCGCAAAAAGATGAATTGAAACAAACGGATGGAGACAATCAAACTATAGGACAGTTGGATAATGATGAACCAGATCCAATTAAGGTGGAATATGATGTTGAAATGGATAAACCAGAGGAAGAACAAGaaacatttgaaaatgtagAAGTATTGGAAGAATATGATAAATGGGATAATGATTCGAATGGTGAGAGAGATGGCATAGAAGACAgtgaaaataaTGAGAATTTGTCTTGTGTTGAGTGCAAGGCGACTTTTTCGAAACCTTTTCAATTGGCGCGACATCGTCGTAAACATAGATCCACTCATCTATATTTTTGTAGACATTGTACCCAACGATTCAAGACAAAGCCTTTGTTAGAAAAACATGGTAAAAGTTGTCAAAGCGAAAAGAGAAGAAGAACAGCGATTAAAAATTACAATGAAAGTGAAGAGGAGGATGTTCCTTTAAGCTCTTTAAAGAAGATTGAAACTGTTAAGAATGAAAAAGAAGAGAATGAAGCAAGTGATGCTAATGATGATAAACCTGAGTCCAAGAAAAGGAAATATAGTAGAGTTCAAATTAGCGACAAAAAGACAGCATATTATTGTTCCAAATGTAAAAACTACTTTAAATATGGCTATCAACTTACGAAACATCAGTGTAGTAGTGCCGATGATGAAGATGATTCACATTTGAGTAAATGTGAAATATGTAATAAATCATTTAATACACCAAATATGTTGCAAAAACATATGAGTGGTAAACACAAAGATATTAATTCTTCCATAAAGTCTATCGATGAAAAAGAGAAAGATTCTACAAAAACACATACAAGAAGTcttaaaaaatcaaaagaaaatattaatgATAATGACAATGACAATGATGACGATGAAGTGGAAATGGATAATGATGATAATTGGAATGAAGATAATAATTCCGACACATCAGAGGATGAAAGTGATATAGATTTTGGCGATAAAGAAAAGACAACACCAAAATCTAAAATCGATACGTCTTCACATCAATATCATTGTACCGAATGTGATGCTtcatttaaatttgaaaaacaattGGAAAGGCATATGAAAAAACACACTGAAGCCCATCGTTTTGTTTGCGTAATCTGTTGGGATAGATTCAAGTATCCTCATATGTTGCAAAAGCATATGGAAAAACATCATCCCGAAGAGGTTCCAAATCCTAAAGTCGAAACGAAACCAGAGAATTTGGAGAAGACACACATTTGTAGTTATTGTCCATCAGCTTATTCGAATATTGGTGGTTTGGCTCAACATATGAGTAAGAAACATCCAGAAATTAAACCTTTCCAATGTGATAAATGCGAAAAGACATTTGTGGTCGAAGAACATTTAAAGATACACATGAATCGTCATATGggtattaaaaatttcaaatgtgATCTTTGTGACAAATCATTCTCTTTCAAATTTGCCATGAAACAACATATGCGCATACATACCGGAGATTTGAATTATCTATGCACCTTGTGTGGTAAAAAATTCTATAGACCCAGTAATTTACGTCAACATATGCAACGTCATGGTGACGATAAACCATATACATGTCCACATTGTCCCAAACGTTTTAAATGTCCATCAGATCGTTATATACATTTGATGTCCCATCAAGTGGGCAAAAATCATGTTTGTCAAACGTGTGGCGCTCGCTTTTCCAGAGTCGATACTTTACATCAACATCAGATGTTACATACAGGATTGAAACCCTATAAATGTGATCAATGTCCAATGGCATTTCCACGTGCGATGAATTTAAATCGACATTTACGTACACATACTGGCGAAAAACCATATAAATGTAAATTCTGCGAAAAAGCTTACGCGCAAAGTAATGATTTGAACAAACATTTACGTACCCATGTGGGTGAAAATACCTACATGTGTACTCAGTGTCCGGCTGCATATAAATATCAGGCTGACTTGAAAAATCACGAATGGGAACATTATCGCAAACAAAAGGAAGCAGAACAACTGGCCAAAGATGAATTGGCAGGTATCAAAATGAAGGAAGAACAAACTGTAATGGAAGGAAATGGAATGGAAgtaaatgtataa
Protein Sequence
MLIHEIYGRVCRVCMCKANNLHDLNETTEECLTMNEMLVKTVSGIQANIEFPVPQEICDLCIEHLQISFRFQQLCTNTTEQMFKIWEQSQKDELKQTDGDNQTIGQLDNDEPDPIKVEYDVEMDKPEEEQETFENVEVLEEYDKWDNDSNGERDGIEDSENNENLSCVECKATFSKPFQLARHRRKHRSTHLYFCRHCTQRFKTKPLLEKHGKSCQSEKRRRTAIKNYNESEEEDVPLSSLKKIETVKNEKEENEASDANDDKPESKKRKYSRVQISDKKTAYYCSKCKNYFKYGYQLTKHQCSSADDEDDSHLSKCEICNKSFNTPNMLQKHMSGKHKDINSSIKSIDEKEKDSTKTHTRSLKKSKENINDNDNDNDDDEVEMDNDDNWNEDNNSDTSEDESDIDFGDKEKTTPKSKIDTSSHQYHCTECDASFKFEKQLERHMKKHTEAHRFVCVICWDRFKYPHMLQKHMEKHHPEEVPNPKVETKPENLEKTHICSYCPSAYSNIGGLAQHMSKKHPEIKPFQCDKCEKTFVVEEHLKIHMNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQVGKNHVCQTCGARFSRVDTLHQHQMLHTGLKPYKCDQCPMAFPRAMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLKNHEWEHYRKQKEAEQLAKDELAGIKMKEEQTVMEGNGMEVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00716940;
90% Identity
iTF_00716940;
80% Identity
-