Lobt019268.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:20221996-20228015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.15 16 7.9 5.1 1 23 32 55 32 55 0.82 2 19 1.6e-05 0.0017 20.5 6.0 1 23 61 83 61 83 0.98 3 19 0.0075 0.8 12.0 0.7 1 23 89 111 89 111 0.97 4 19 2e-05 0.0022 20.1 4.9 1 23 119 141 119 141 0.98 5 19 1.3e-05 0.0014 20.7 0.6 1 23 147 169 147 169 0.99 6 19 9.4e-07 0.0001 24.3 1.3 1 23 177 199 177 199 0.99 7 19 0.026 2.7 10.4 7.8 2 23 206 227 205 228 0.95 8 19 0.00012 0.012 17.7 3.6 1 23 234 256 234 257 0.96 9 19 1.7 1.8e+02 4.6 4.3 1 23 265 288 265 288 0.95 10 19 0.046 4.9 9.5 2.3 3 23 299 319 297 319 0.96 11 19 1.3e-06 0.00013 23.9 5.2 1 23 324 346 324 346 0.99 12 19 0.031 3.3 10.1 0.5 1 23 352 374 352 374 0.97 13 19 0.0041 0.44 12.8 5.1 1 23 382 404 382 404 0.98 14 19 3.2e-05 0.0034 19.5 6.5 1 23 410 432 410 432 0.98 15 19 3.3e-06 0.00035 22.6 1.7 1 23 440 462 440 462 0.98 16 19 0.03 3.1 10.2 4.1 2 23 469 490 468 490 0.98 17 19 4.7e-07 5e-05 25.2 2.0 1 23 498 520 498 520 0.98 18 19 0.00036 0.038 16.2 3.5 1 23 526 548 526 548 0.98 19 19 2.3e-07 2.4e-05 26.2 2.5 2 23 557 578 556 578 0.97
Sequence Information
- Coding Sequence
- ATGGGAATAGGGGACGAAGAAGCATCTTGCAATGAAGACTCCGATCAAGAGTATAACAGTGATCGTTCTGATTTACCTATTAGTGACAGACTCTTTGAGTGTGACATATGTCACAAatctttcaaaaaaaaacaaattcttcaatgtcatttaaaatatgttcataCTGACGAAAAACCTTATAGTTGTGACACATGTCACAAAAGTTACAAAACTAAACATCAACTTAAACAGCATATGGCTGTACATTCTGACGAAAGGCCTTATGAATGTAATTTATGTAACATGCGCTTCCGAGTTCTTCAAACTCTAGTTTTACACAAAGAGCGACACAAGGGAGAAGCGGGTAGAAATCACAAGTGTGAACATTGTGATAGAAAGTTTTTTCGTAAATCTGAATTGAACATTCACGCACGTGTTCATACTGGTGACAGACCTTATAAATGTGACAAATGCGAAAAAGACTTCATGTCTAATTCAGCACTAAGCGGCCACATTAGGACACACTTGGGGGAAGCCGGAAAAACGTATAAATGTGAAAATTGTGATAAGAAATTTGTTCGCTCCAGTGAATTAATTTCTCACAAATTAACACACATTAGCGAAAAGCTTGTTGAATGCGATATCTGTCACGAACATTTTAAGgctaacaaatatttaaaagcTCATCACAAAAAACATCATATGCAAGAAAAACCATTTAAATGTGATAAATGCCCACAAGGCTTCGCTACGAAAACGAAATTACGACATCATATAGATATACATCATGTTGATAAAGAAGAAAAACCATTTAAGTGTATTATATGTTCATTACGTTACACTAAACAATGCTATTTACGATATCATCTAGAAAGACAACATCAGCCATCTGCCACAATTGAAGAAACCGCATGTGACATATGCCATAAActtattaaaaacaaatattatcTAAATCTTCACAAAAAGTTGCATATGGGAAAACCTTATAAATGTAGACATTGTGATAAGACATTCACACTCAAATCTGATTTACAAAAACACACTCGGGTTCACACTGGAGAAAATCCGTATGAATGTGGTGTATGCCAACGTCGTTTCATGTTTCCTTTAAGTTTAAGCGATCACAAAAACTTGCACCTGGGAGAAGCTGAACAAATTTATAATTGTGAACACTGTGACAGGAAATTTTTACGTAGATGTGATTTAAGTTCTCATATACGTGTTCACTCAGGCGAAAAACCGTTTGAATGTGATACCTGCCACAAACGTTTTCGCACTACCTCACATCTAAAGGTTCACCAAATCAGACATATGGGAGAAGCTGGAAGAATTTATAACTGTGAATATTGTGATAAGAAATTTTTTCGTAATTCAGACTTAAGTGCCCACACACTTACGCACACTGGTAAATCTTCTAATAAATGTGATATCTGTCACAAACGTTACCAAACTATTGAAAAACTTAGCAATCACAAAAAGAGTCATATGGGGCAAGCTGAACGAATTTTCAATTGTGATCAATGTGATAAGAAATTTAAACGTAGCGCGGATCTAAAGACCCACCAACGTATTCACACTGGCGAAAAGCCTTATGAATGTGAGATATGTCACAAGCGTTTTCGAGccaatcaaaatttttttgttcacaaaaagATACATATGGGTGATGcatcaaaaactttaaaatgtgattattgtgataaaaaatttaaacgTAATCTAGAGCTTCGCAGACACATTAGAACCCATACTAAAGAAATGCCGTTTAAATGTGATATCATGTCGAAAGAGATCATTCCTCAACCGGTCCAACTGATGCATCCTAAACCAGACGTATTAAGAGAACAATTAGAATTACAAGTACAAAAGAAAATAGTTGAAGAACTAAAACAGAAACTAATGCAGCAAGTGAAAAACGAAGATGGTGAAAATAAATGA
- Protein Sequence
- MGIGDEEASCNEDSDQEYNSDRSDLPISDRLFECDICHKSFKKKQILQCHLKYVHTDEKPYSCDTCHKSYKTKHQLKQHMAVHSDERPYECNLCNMRFRVLQTLVLHKERHKGEAGRNHKCEHCDRKFFRKSELNIHARVHTGDRPYKCDKCEKDFMSNSALSGHIRTHLGEAGKTYKCENCDKKFVRSSELISHKLTHISEKLVECDICHEHFKANKYLKAHHKKHHMQEKPFKCDKCPQGFATKTKLRHHIDIHHVDKEEKPFKCIICSLRYTKQCYLRYHLERQHQPSATIEETACDICHKLIKNKYYLNLHKKLHMGKPYKCRHCDKTFTLKSDLQKHTRVHTGENPYECGVCQRRFMFPLSLSDHKNLHLGEAEQIYNCEHCDRKFLRRCDLSSHIRVHSGEKPFECDTCHKRFRTTSHLKVHQIRHMGEAGRIYNCEYCDKKFFRNSDLSAHTLTHTGKSSNKCDICHKRYQTIEKLSNHKKSHMGQAERIFNCDQCDKKFKRSADLKTHQRIHTGEKPYECEICHKRFRANQNFFVHKKIHMGDASKTLKCDYCDKKFKRNLELRRHIRTHTKEMPFKCDIMSKEIIPQPVQLMHPKPDVLREQLELQVQKKIVEELKQKLMQQVKNEDGENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -