Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465296.1:20202826-20210956[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.5e-06 0.00047 22.2 0.6 2 23 9 30 8 30 0.97

2 18 0.00081 0.086 15.1 2.7 1 23 36 58 36 58 0.97

3 18 4.2e-07 4.4e-05 25.4 3.0 1 23 66 88 66 88 0.98

4 18 0.001 0.11 14.8 4.8 1 23 94 116 94 116 0.98

5 18 0.014 1.4 11.2 5.6 1 23 124 146 124 146 0.96

6 18 2.8e-05 0.0029 19.7 1.4 1 23 150 172 150 172 0.98

7 18 0.00053 0.056 15.7 6.8 1 23 181 203 181 203 0.97

8 18 0.00018 0.019 17.1 1.8 1 23 209 231 209 231 0.98

9 18 3.4e-05 0.0036 19.4 1.6 2 21 240 259 239 260 0.94

10 18 0.1 11 8.5 3.6 2 23 263 283 262 283 0.96

11 18 1.8e-07 1.9e-05 26.6 3.1 1 23 291 313 291 313 0.98

12 18 0.00017 0.018 17.2 2.2 1 23 319 341 319 341 0.97

13 18 2.3e-07 2.4e-05 26.3 3.1 2 23 350 371 349 371 0.97

14 18 0.0014 0.15 14.3 4.5 1 23 377 399 377 399 0.98

15 18 0.028 2.9 10.2 5.6 1 23 407 429 407 429 0.96

16 18 2.8e-05 0.0029 19.7 1.4 1 23 433 455 433 455 0.98

17 18 1.1e-06 0.00011 24.1 5.7 1 23 464 486 464 486 0.98

18 18 0.00013 0.013 17.6 2.7 1 23 492 514 492 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.5e-06	0.00047	22.2	0.6	2	23	9	30	8	30	0.97
2	18	0.00081	0.086	15.1	2.7	1	23	36	58	36	58	0.97
3	18	4.2e-07	4.4e-05	25.4	3.0	1	23	66	88	66	88	0.98
4	18	0.001	0.11	14.8	4.8	1	23	94	116	94	116	0.98
5	18	0.014	1.4	11.2	5.6	1	23	124	146	124	146	0.96
6	18	2.8e-05	0.0029	19.7	1.4	1	23	150	172	150	172	0.98
7	18	0.00053	0.056	15.7	6.8	1	23	181	203	181	203	0.97
8	18	0.00018	0.019	17.1	1.8	1	23	209	231	209	231	0.98
9	18	3.4e-05	0.0036	19.4	1.6	2	21	240	259	239	260	0.94
10	18	0.1	11	8.5	3.6	2	23	263	283	262	283	0.96
11	18	1.8e-07	1.9e-05	26.6	3.1	1	23	291	313	291	313	0.98
12	18	0.00017	0.018	17.2	2.2	1	23	319	341	319	341	0.97
13	18	2.3e-07	2.4e-05	26.3	3.1	2	23	350	371	349	371	0.97
14	18	0.0014	0.15	14.3	4.5	1	23	377	399	377	399	0.98
15	18	0.028	2.9	10.2	5.6	1	23	407	429	407	429	0.96
16	18	2.8e-05	0.0029	19.7	1.4	1	23	433	455	433	455	0.98
17	18	1.1e-06	0.00011	24.1	5.7	1	23	464	486	464	486	0.98
18	18	0.00013	0.013	17.6	2.7	1	23	492	514	492	514	0.98

Sequence Information

Coding Sequence: ATGGAGGAGTCTACAAAAGTTATTGAATGTCCACATTGCGATAAGAAGTTTAGATCTCGTGGTGCATTAAATCCCCACATGAGGGTTCATACTGGAGAAAAACCATTTGAATGTGATATATGTCACAAACTTTTCAGttttaaaaatactttaaatgTTCACAAACAGGGGCATTTGGGAGAATCtgccaaaaaatttcaatgCAAACATTGTGAAAAGAAATTCGTAAATAGTTCTAATTTAAAAGCTCACCTTGTAACACATACTAGCGATAGACCTTTTAAATGCGATTTATGCCACAAAAAATTACGCAATGCCAGAACTCTAAAACGTCATAAAATCAGGCATACGGGAGAAGCTGGAAAAGTTCATAATTGTGAATATTGTAGTATGAAATTCTTTTTCAAAAGTGATTTAGTAGCCCACACACGTCATCACTCATTACCTTTTAAGTGCGATATATGCTCTAAAAGTTATGAAACTAATGATGAACTTAGTAGTCACAAGCAAAGACATATAAAACCCAATGCTGAAGGGATTTATAATTGTGAACATTGTGATAAGAAATTTAAACATAAGAACGGTTTTACAAACCACTTATTTGTTCACACTGGTCAAAAACCCTATGAATGTGAGATATGTCACAAACGTTTTGCAATAAGAGGAAATATGACGACTCACAAAAAGATACATTTGGGTGATgcagcaaaaaaaataaaatgtgaaTATTGTGATAAAAAGTTTCAACGAAATCAAGAGTTTCGGAAACACATGATGAGAGAAACCGAATGTGATATATGCCACAAACGTTTAAAAAGAACAAGTCTAAAGAGTCACAGAAAAGTGCATATGGGAGAATCTGCAAAAATTTTCGAATGTCCACATTGCGATAAGAAGTTTAGATATCGTAATGAATTAAACTCCCACATGAGGGTTCATACTGGAGAAAAACCATTTGAATGTGATATATGTCACAAACTTTTCAGATTAAAAAGTACTTTAAATGTTCACAGACAGTGGCATTTGGGAGAATCTGCAAAAAAATTGCAATGCAATTATTGTCAAAAGAAATTCTCAAATAGTTCTAATTTTAAAGCTCACCTTAAAACACATACTAGCGATAGACCTTTTAAATGCGATATATGCCACAAAAAATTACGCAATATCACAACTCTAAAACGTCATAAAATCAGGCATTTGGGAGAAGCTGGCAAAGTTCATAATTGTGAATATTGTAGTATGAAATACTTTTTCAAAAGTGATTTAGAAGCCCACACACGTCATCACCCATTACCTTTTAAGTGCGATATATGCTCTAAAAGTTATGAAACTAATGATGAACTTAGTAGTCATAAGCAAAGACATATAAAACCCAATGCTGAAGGGATTTATAATTGTGAACATTGTGATAAGAAATTTAAACATAGTTCTAGTCTTAAAATCCATTTACGTGTTCATACTGGTGAAAAACTCTATGAATGTGAGATATGTCACAAACGTTTTACAATAAGAGGAAATATGACGACTCACAAAAAGATACATTTGGCCGAtgcagcaaaaaaaaataaataa
Protein Sequence: MEESTKVIECPHCDKKFRSRGALNPHMRVHTGEKPFECDICHKLFSFKNTLNVHKQGHLGESAKKFQCKHCEKKFVNSSNLKAHLVTHTSDRPFKCDLCHKKLRNARTLKRHKIRHTGEAGKVHNCEYCSMKFFFKSDLVAHTRHHSLPFKCDICSKSYETNDELSSHKQRHIKPNAEGIYNCEHCDKKFKHKNGFTNHLFVHTGQKPYECEICHKRFAIRGNMTTHKKIHLGDAAKKIKCEYCDKKFQRNQEFRKHMMRETECDICHKRLKRTSLKSHRKVHMGESAKIFECPHCDKKFRYRNELNSHMRVHTGEKPFECDICHKLFRLKSTLNVHRQWHLGESAKKLQCNYCQKKFSNSSNFKAHLKTHTSDRPFKCDICHKKLRNITTLKRHKIRHLGEAGKVHNCEYCSMKYFFKSDLEAHTRHHPLPFKCDICSKSYETNDELSSHKQRHIKPNAEGIYNCEHCDKKFKHSSSLKIHLRVHTGEKLYECEICHKRFTIRGNMTTHKKIHLADAAKKNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00892927;
90% Identity: iTF_00892927;
80% Identity: iTF_00892927;