Lobt019274.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophora obtusa
Gene Symbol
-
Assembly
GCA_949987735.1
Location
OX465296.1:20262493-20272569[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0021 0.22 13.8 2.2 1 23 134 156 134 156 0.99
2 25 7.9e-05 0.0084 18.3 7.0 1 23 162 184 162 184 0.97
3 25 0.0009 0.095 14.9 3.7 1 23 192 214 192 214 0.96
4 25 0.00013 0.013 17.6 5.5 1 23 220 242 220 242 0.98
5 25 0.00033 0.035 16.3 1.4 1 23 248 270 248 270 0.98
6 25 0.0047 0.5 12.7 4.4 1 23 276 298 276 298 0.97
7 25 2.3e-06 0.00024 23.1 1.7 1 23 306 328 306 328 0.98
8 25 0.00011 0.012 17.8 6.6 1 23 334 356 334 356 0.98
9 25 9.3e-07 9.8e-05 24.3 3.8 1 23 364 386 364 386 0.99
10 25 1.7e-05 0.0018 20.4 0.7 1 23 393 415 393 415 0.98
11 25 9.3e-05 0.0098 18.0 1.6 1 23 423 445 423 445 0.99
12 25 2 2.1e+02 4.4 0.4 1 11 451 461 451 464 0.86
13 25 0.00038 0.04 16.1 8.8 1 23 492 514 492 514 0.99
14 25 7.6e-05 0.008 18.3 3.6 1 23 520 542 520 542 0.97
15 25 0.0023 0.24 13.6 2.9 1 23 548 570 548 570 0.98
16 25 0.00016 0.017 17.3 6.6 1 23 578 600 578 600 0.98
17 25 0.00019 0.02 17.1 1.2 1 23 606 628 606 628 0.99
18 25 7.8e-05 0.0083 18.3 3.0 1 23 646 668 646 668 0.99
19 25 0.0035 0.37 13.1 7.4 1 23 675 697 675 697 0.99
20 25 5.5e-05 0.0059 18.7 3.5 1 23 705 727 705 727 0.98
21 25 0.027 2.8 10.3 4.8 1 23 733 755 733 755 0.98
22 25 0.00037 0.039 16.2 2.6 1 23 763 785 763 785 0.97
23 25 0.01 1.1 11.6 0.5 1 21 791 811 791 812 0.91
24 25 1.9e-06 0.0002 23.3 2.0 1 23 821 843 821 843 0.98
25 25 0.0059 0.63 12.4 3.4 1 23 849 871 849 871 0.98

Sequence Information

Coding Sequence
ATGCGTAAACAACAAACCTCACTGGATATTCGTGAActtgttttaaaatattacaaagAAGGAAAAACATTGCGCGAAATTGGTTTTATGATTAAAAGAAGCCACAATACTGTAAAATACATAATTGATAAgtataaaaagttttcaattCTACAAAATCGTCCGAGATCTGGAAGGCCAAACAAACTAAATGGAATTGAAATACGAACCATTCTACAAAATGTTAAACAAAATCCTTTTGAAAGTGCTGTTAAAATATCCGAGAACATTTCAGAATGCTCAGGTATCAACGTTAGCCCCAGCACAATACGTAGAACACTAAATGCAAATGGACCGTCTACAAATGATGAAACATCTTACAATGAAGAACCCATTCAGGACCTCAGCAATGATCGTCGTTATAAATGCACACAATGCAAAGAACAATTTCGCAGTATTTCGAATTTATTGTTCCACCAGCGTATTCATACCTACGAAAAATCTTATGCATGTGATATATGCCATAAAAGTTTCAAACATAATCACACCCTAAATATTCATAGAAGGTTGCATATGGGTGAATCGGGGAAAATGTACATGTGTGAACATTGTGATATGAAATTTATACGAAAAGTTGATTTAAAAACCCATTCACATATTCATACTGGCGAAAAACCTTATGAATGTCATATATGCCACAAACGTTACGTATATAGATCCAGTCTAACTTATCACATAAAGTTGCATTTAGGAGAAGCTTTGTATAATTGTGTATTTTGTGATATGAAATTTATACgaaaatttgaatttgaaaGACACGTACGTGTTCACACTGGCGAAACTATCTATGAATGTGATATATGCCACAAACGTTTTCGAAATAATACCGCTCGAAACTATCACAAAAAGTTGCACTTGGGAGAAGCTgcaaaaatttataattgtGAACACTGTGGAATGAAATTCATACGTAATTATGATTTAAATAATCACATACTTACACATACTGGCGAAAACCCTTATGAATGTGATATATGTCACAGAGGTTTCAAAGTTAAACATAACCTAAATCATCATAAAAGGGTGCACATGGACGAAGCTGCCAGAATTTATAGTTGTAAATATTGTgataagaaatttaaattaaaaaataatttgaaaaatcaCATTCGTATGCATGCGAGAAAAGAACCTCCTTATAAATGTGATATATGTGACAAAGGTTTCAGAGTTAAGTCAGCGTTAAGTGACCACAGCAAAAGACATATGGGAGACGCTGGAAAAAAATTCAAATGTGATGATTGTGATATGAAATTTTTTCGTAATTATCGATTAATTGCTCACAAACGCGTACATACTGGCGAAAAACCTTTTGAATGTGATATATGCCATAAACAATACGCAGTTAAACAAATCGAAGAAACATCTTACAATGAAAAATCCGATCAGCACAATAGCAATGATCGTTCTGATTTAGATACTGGCAACAAATCTTTTAAGTGTCACATATGTCACAAAactttcaaaattaaaaaatattttaaatcaCATTTACGTATTCATGCTGCCGAAAAATCTTATGATTGTGATATATGTCACAAAAACTTTACAACTAAACAAGTTCTTAAACATCATATGGCTGTACATTCAGACGAAAAACCTTATGAATGTGATATATGCCACCTTCATTTCCGAGTTTCTAAAGGTCTAGTTGCACACAAAAAGCGACATATGGGAGAAGCTGGTAAAAATCACAAGTGCGAACATTGTGGTAAGAAATTTATTCGTAAATGTGAATTGGTTACTCACGAACGTGTTCACACTGGCGAAAGACCTTATAAATGTGACATATGCAAAAAAGGCTTCGCGTCTAAATCAGTGCTACTTTACCACAATAAGACGCACAAGGGAGAATCTGgaaataattatttaaatattcataCTGACGAAAAACCTTATGAATGTGACATATGTcataaaatttacaatattaaaAAGTCTCTTAAACGCCATAGACGTATTCACACTGAAGAAGAAGAACCTTATAAATGTGATATATGTCACAAACGTTTTCGAGTCTTAAAATGTTTAAATGAACACAAAAAGAGGCATATTGGAGAAGCggcaaaaaaatataattgtgAACAATGTGACAAGAAATTTATTCGCAAATGTGAATTGACTATCCACAAACGTGTCCATACTGGTGAACGACCTTTTAAATGTGAGATATGCGACAAGGATTTCCTATCTAAATCCAATCTCAATTGTCACAAAAAGAGGCACATCGGTCAGACTGGGATAACTTATAATTGTCCAcattgtgataacaaatttaTTACCAAATATGATTTCAATATTCACAGAAGTGTCCATGTTAGTGAACAACCGTTTAAATGCAATATATGTCCCAAAGGTTTTCAATCTAAAAATGGTTTGAATTTCCACCAAAAGATCTGCAAGGAAAATGCTAAAATAAGTTATAACTGTGAATATTGTGATAAGAAATTTATTCGGAAATCTGAATTAGTTAGCCATAAGCGCAGTCATCCCGATGAAATGCCATTTCAATGTGATATATGTCATAAACGTTTCGCGACCAATTTAAGTGTTGTTTATCACAAAAAGAAGCATTTGAATAAAGAAAAGTAA
Protein Sequence
MRKQQTSLDIRELVLKYYKEGKTLREIGFMIKRSHNTVKYIIDKYKKFSILQNRPRSGRPNKLNGIEIRTILQNVKQNPFESAVKISENISECSGINVSPSTIRRTLNANGPSTNDETSYNEEPIQDLSNDRRYKCTQCKEQFRSISNLLFHQRIHTYEKSYACDICHKSFKHNHTLNIHRRLHMGESGKMYMCEHCDMKFIRKVDLKTHSHIHTGEKPYECHICHKRYVYRSSLTYHIKLHLGEALYNCVFCDMKFIRKFEFERHVRVHTGETIYECDICHKRFRNNTARNYHKKLHLGEAAKIYNCEHCGMKFIRNYDLNNHILTHTGENPYECDICHRGFKVKHNLNHHKRVHMDEAARIYSCKYCDKKFKLKNNLKNHIRMHARKEPPYKCDICDKGFRVKSALSDHSKRHMGDAGKKFKCDDCDMKFFRNYRLIAHKRVHTGEKPFECDICHKQYAVKQIEETSYNEKSDQHNSNDRSDLDTGNKSFKCHICHKTFKIKKYFKSHLRIHAAEKSYDCDICHKNFTTKQVLKHHMAVHSDEKPYECDICHLHFRVSKGLVAHKKRHMGEAGKNHKCEHCGKKFIRKCELVTHERVHTGERPYKCDICKKGFASKSVLLYHNKTHKGESGNNYLNIHTDEKPYECDICHKIYNIKKSLKRHRRIHTEEEEPYKCDICHKRFRVLKCLNEHKKRHIGEAAKKYNCEQCDKKFIRKCELTIHKRVHTGERPFKCEICDKDFLSKSNLNCHKKRHIGQTGITYNCPHCDNKFITKYDFNIHRSVHVSEQPFKCNICPKGFQSKNGLNFHQKICKENAKISYNCEYCDKKFIRKSELVSHKRSHPDEMPFQCDICHKRFATNLSVVYHKKKHLNKEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-