Lobt019185.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- ZBTB41_1
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:19323151-19338319[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 43 1.4 1.5e+02 4.9 0.5 9 23 2 16 1 16 0.92 2 43 0.0044 0.47 12.8 2.6 1 23 22 44 22 44 0.97 3 43 1.9e-05 0.002 20.2 3.4 1 23 52 74 52 74 0.99 4 43 0.022 2.3 10.6 6.7 1 23 80 103 80 103 0.97 5 43 4.1e-05 0.0043 19.2 6.6 1 23 111 133 111 133 0.98 6 43 9.5e-06 0.001 21.2 0.8 1 23 139 161 139 161 0.98 7 43 0.00055 0.059 15.6 1.7 2 21 170 189 169 189 0.96 8 43 0.23 24 7.4 2.2 2 23 197 217 196 217 0.92 9 43 0.12 13 8.2 10.3 1 23 225 247 225 247 0.96 10 43 0.0018 0.19 14.0 0.8 2 23 253 274 252 274 0.97 11 43 0.0086 0.91 11.9 7.9 1 23 280 302 280 302 0.98 12 43 3.2e-06 0.00034 22.6 1.3 1 23 310 332 310 332 0.98 13 43 0.0042 0.44 12.8 1.1 1 23 338 360 338 360 0.97 14 43 0.00088 0.093 15.0 3.2 1 23 368 390 368 390 0.99 15 43 2.8e-05 0.003 19.7 5.0 1 23 396 418 396 418 0.97 16 43 4.6 4.8e+02 3.3 4.4 1 23 426 450 426 450 0.90 17 43 0.041 4.4 9.7 4.5 1 23 454 476 454 476 0.98 18 43 1.3e-07 1.4e-05 27.0 2.5 1 23 484 506 484 506 0.98 19 43 0.00036 0.038 16.2 0.6 1 23 512 534 512 534 0.98 20 43 0.00024 0.026 16.7 0.6 2 21 543 562 542 562 0.96 21 43 7.4 7.8e+02 2.6 4.4 2 23 570 590 569 590 0.89 22 43 0.052 5.6 9.4 6.2 1 23 598 620 598 620 0.96 23 43 0.0024 0.25 13.6 0.9 1 23 626 648 626 648 0.99 24 43 0.00071 0.075 15.3 7.3 1 23 654 676 654 676 0.98 25 43 6.3e-05 0.0067 18.6 2.2 1 23 684 706 684 706 0.97 26 43 0.00038 0.04 16.1 1.4 2 23 709 730 708 730 0.97 27 43 3.5e-05 0.0037 19.4 6.1 1 23 736 758 736 758 0.98 28 43 0.011 1.1 11.5 4.1 1 23 766 790 766 790 0.92 29 43 0.01 1.1 11.6 4.6 1 23 794 816 794 816 0.98 30 43 0.00045 0.048 15.9 3.2 3 23 826 845 824 845 0.98 31 43 4.3e-05 0.0045 19.1 1.7 1 23 851 873 851 873 0.99 32 43 1.6e-05 0.0016 20.5 1.0 2 21 882 901 881 902 0.95 33 43 0.41 43 6.6 1.5 2 23 909 929 908 929 0.93 34 43 0.58 62 6.1 12.8 1 23 937 959 937 959 0.95 35 43 0.018 1.9 10.9 4.2 1 23 965 987 965 987 0.98 36 43 0.0014 0.15 14.3 2.1 2 23 995 1016 994 1016 0.96 37 43 0.00056 0.06 15.6 0.8 1 23 1024 1046 1024 1046 0.98 38 43 0.06 6.3 9.2 7.0 1 23 1051 1073 1051 1073 0.98 39 43 0.0002 0.022 17.0 2.1 2 23 1076 1097 1076 1097 0.98 40 43 0.00034 0.036 16.2 5.7 1 23 1103 1125 1103 1125 0.98 41 43 0.0018 0.19 14.0 3.2 1 23 1154 1176 1154 1176 0.98 42 43 1e-05 0.0011 21.0 4.0 1 23 1184 1206 1184 1206 0.98 43 43 3.5e-05 0.0037 19.4 1.0 1 23 1212 1234 1212 1234 0.99
Sequence Information
- Coding Sequence
- ATGAAGTTTATACGTTCTTCTGATTTGAAGCACCACGTGGCGATTCATACTGGAAAGAAACCATTTGAATGTGATATATGTTACTATCGTTACCGATCTAAAAAGAGTTTGGATCGTCACAAGCAGCTGCATATGGGAGAATctgaaaataattttcaatgCAAACATTGCGAGAAGAAACTTTCAAGTGAATCGAATTTAAGAATTCACCTTAGATCACATGTTGGCGAAGGGCCTTTTAAATGTGATATATGccataaacattttcaaacTGCTGAAAGACTTAGTAATCACAAAAAGAGACGACATATGGGACAAGTTGAACAGATTTTTAATTGTGAACACtgtaataagaaatgtaatcGTAGTTCTGATCTTAAAGTCCATTTACGTACTCACACTGGCGAAATACCCTATAAATGTGAGATATGTcacaaaatttttgcatataGTGGAAATTTAGTTGCTCACAAAAAGATACATACAAGCGATACGGAAAAACCTTTAAAATGTGAATATTGTGATAAAAAGTTTAAACGAAAACTACGGCTTTTGAGTCACATGAGACCATCTAAAAGTGCTGAAGTCGAATGTGAAATATGTCACAAACGTTTAAAAAGGCGAAGTCTAAAGAATCACAGAGAGATACATATGGGAGAATCTGAAAAAATTCACAATTGTCAACATTGTGAAAGGAAATTTTTCTATCATTCTAACTTAAAAACCCACACAAAACTCCATACTTTAAGACTTTTAGAATGCGAATATTGTGAAAAGAAGTTTATGTATGTTTCTCGCTTAAAATCACACATTAACTCACATACTGGCGAAAAACCTTATAAATGTGATGTTTGTACCAAACATTTTTCATTTCGAAGCTGTTTAAGGGAGCACAAAAAACTGCATATAGGAGAAACGGCAAAAATTTACAACTGTCAATTGTGTGATATGAAGTTTATACGCCGTTCTGATTTAAGGCGACACCTGAGGATTCATACTGGAGAAAAACCATTTGAATGTGATATATGTGACTATCGTTACCAGTCTAAAAAGGGTTTGGATCGTCACAAGCAGTTGCATTTGAGAGACTCCGAAAATAATTTTCAATGCAAACATTGTGAAAAGAAATTTTCAAGTGATGAGATTTTAAGAATTCACCTTAGAACACATATTGGCGAAGGACCTTTTCAATGTGATATATGTCACAAATGTTTTCGCACTaacaactatttaaaatctcaCATAATCGGACATACCGGGGAGGCTGGAAGAATTCATAATTGTGAACGTTGTGACCAGAAATTTGTTTGTAAAACTGATTTAGTCATCCACATACATACCGCCAGACACGATTTGCCTCATAAATGTGATATGTGCACTACATGTTTTGAAACTATTGAAGAACTTAGTGATCACAAAAAGAGCCACATCGGACAAGGTGATCGGATTTTTGATTGTGAATATTgtgataaaaaatttaaacgTAATTCTTATCTTAAAATTCACATACGTACTCACACTGGAGAAAAACCATATGAATGTCAGATATGTCAGAAACGTTTTGCAGCCAGTGGAAATTTTGCTAGTCACAAAAAGATGCATATGGGCGATGTAGTAAAATCTTTAAAATGTGAATATTGTGATACAAGATTTAGACGAAATTTAGAGCTTCGGAGTCACATCAGACCATCTAAAAATGCTGAAGTCGAATGTGAATTATGTCACAAACATTTAAAAAGGCAAAGTCTAAACTATCACAGAAAGATACATATGGGAGAATCTGCAAAAATTCACAATTGTCAACATTGTGGAAAGAAATTTTTAGATCGCTATAAGTTAGAAACACACACAAAACTCCATACTGGTGTAAAACTTTTTCAATGCGAATATTGTGAAAAGAAATTTTTACTTGATTCTTACTTAAAAGCACACATTATGACACATACGGACGAAAAACCTTATAAATGTGATGTTTGTCCCAAACATTTTGCATCTCAAAGCTGTTTAACACACCACAAAAAATTGCATATAGGAGAATCGGCAAAAATTCACAACTGTCAACAGTGTGATATGAAGTTTATACGTTCTGCTGATTTAAAACGACACCTGAAGATTCATTTGAAAGAATGTAAATATTGTGAAAAGAAACTTTCAAGTGATGAGAATTTAAGACTTCACCTTAGAACACATATTGGCGAAGGATCTTTTAAATGTGATATATGTCACAAAAGTTTTCGCACTaacaactatttaaaatctcaCAAAATGAGACATACCGGGGAAGCTGTAAGAATTCATAATTGTGTACATTGTGATCAGAAATATTTTCGTAGATCTGACTTAATAAGCCACATACAAACTACAAGACACGATTTGCCTCATAAATGTGATATGTGCACTAAACGTTTTCAAACTCTTGAAAAACTAAGTGATCACAGAAAGAGCCATATCGGACAAGGTGAACGGATTTATGGTTGTGAACATTGTGAGAAAAAATTTACACGTAGTTATCTTAAAGTCCACTTACGTACTCACACTGGCGAAAAACCCTACAAATGTCAGATATGTCAGAGACGTTTTGCAAACAGTGGAAATTTTGCTAGTCACAAAAAGATGCATATGGGCGATGcagcaaaaactttaaaatgtGAATATTGTGATAAAAAATTTAGACGAAATCTAGAGCTTCGGAGTCACATGAGACTATCTAAAAGTGCTGAAGTCGAATGTGAAATATGTCACAAACGTTTAGAAAGGCGAAGTCTAAAGAATCACAGAGAGATACATATGAGAGAATCTGCAAAAATTCATAATTGTCAACATTGTGAAAGGAAATTTTTCCATCATTCTAATTTAAAAAGCCACACAAAATTCCATATTGGTGTAAAGCATTTTAAATGCGAATATTGTGAAAAGAAGTTTGTATGTGGTTCTTACTTAAAAGAACACATTAAAAAACATACTGGTGAAAAACCTTATAATAAGTGTGATGTTTGTGCCAAATATTTTTCATCTCAAAGCTATTTAACTcagcacaaaaaatttcatatgGGAGAATGGGCAAAAATTTACAACTGTCAAGACTGTGATATGAAGTTTTTACGTCCTGATTATTTAAAGCAACACCTGAAGATTCATACTGGAGAAAAATTTGAATGTGATATATGTCACAATCGTTACTGTTATAAAAAGAATTTGGATCGTCACAAGCAGTCGCATTTGCGACAATGCAAATATTGTAAGAAGAAACTTTCAAGTGATGAGAATTTAAGAATTCACCTTAGAACACATATTGGCGAAGGACCTTTTAAATGTGATATATGTCACAAACGTTATCGCACTAAcagatatttaaaaaatcacaaaatcAGTCATACCGAGGAAGCTGTAAGAACTAATAATTGTGAAAGTAAATCTGAATTAATAAGCCACATACAAACTACAAGACACGATTTGCCCCATAAATGTGATATGTGCCCTAAATCTTTTCAAACTCTTGAAAAACTTAGTGATCACAAAAAAAGCCACATCGGCCAAGGCGAACGGATTTTTGATTGTGAACATTgtgataaaaaatttaaacttaattCTTATCTTAAAATCCACTTACGTACTCACACTGGCGAAAAACCCTTTAAATGTCAGATATGTCAGAGACGTTTTGCAGCCAGTGGAAATTTAGCTAGGCACAAAAAGACGCATATGGACGATGAAGCAAAATAA
- Protein Sequence
- MKFIRSSDLKHHVAIHTGKKPFECDICYYRYRSKKSLDRHKQLHMGESENNFQCKHCEKKLSSESNLRIHLRSHVGEGPFKCDICHKHFQTAERLSNHKKRRHMGQVEQIFNCEHCNKKCNRSSDLKVHLRTHTGEIPYKCEICHKIFAYSGNLVAHKKIHTSDTEKPLKCEYCDKKFKRKLRLLSHMRPSKSAEVECEICHKRLKRRSLKNHREIHMGESEKIHNCQHCERKFFYHSNLKTHTKLHTLRLLECEYCEKKFMYVSRLKSHINSHTGEKPYKCDVCTKHFSFRSCLREHKKLHIGETAKIYNCQLCDMKFIRRSDLRRHLRIHTGEKPFECDICDYRYQSKKGLDRHKQLHLRDSENNFQCKHCEKKFSSDEILRIHLRTHIGEGPFQCDICHKCFRTNNYLKSHIIGHTGEAGRIHNCERCDQKFVCKTDLVIHIHTARHDLPHKCDMCTTCFETIEELSDHKKSHIGQGDRIFDCEYCDKKFKRNSYLKIHIRTHTGEKPYECQICQKRFAASGNFASHKKMHMGDVVKSLKCEYCDTRFRRNLELRSHIRPSKNAEVECELCHKHLKRQSLNYHRKIHMGESAKIHNCQHCGKKFLDRYKLETHTKLHTGVKLFQCEYCEKKFLLDSYLKAHIMTHTDEKPYKCDVCPKHFASQSCLTHHKKLHIGESAKIHNCQQCDMKFIRSADLKRHLKIHLKECKYCEKKLSSDENLRLHLRTHIGEGSFKCDICHKSFRTNNYLKSHKMRHTGEAVRIHNCVHCDQKYFRRSDLISHIQTTRHDLPHKCDMCTKRFQTLEKLSDHRKSHIGQGERIYGCEHCEKKFTRSYLKVHLRTHTGEKPYKCQICQRRFANSGNFASHKKMHMGDAAKTLKCEYCDKKFRRNLELRSHMRLSKSAEVECEICHKRLERRSLKNHREIHMRESAKIHNCQHCERKFFHHSNLKSHTKFHIGVKHFKCEYCEKKFVCGSYLKEHIKKHTGEKPYNKCDVCAKYFSSQSYLTQHKKFHMGEWAKIYNCQDCDMKFLRPDYLKQHLKIHTGEKFECDICHNRYCYKKNLDRHKQSHLRQCKYCKKKLSSDENLRIHLRTHIGEGPFKCDICHKRYRTNRYLKNHKISHTEEAVRTNNCESKSELISHIQTTRHDLPHKCDMCPKSFQTLEKLSDHKKSHIGQGERIFDCEHCDKKFKLNSYLKIHLRTHTGEKPFKCQICQRRFAASGNLARHKKTHMDDEAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -