Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00014 0.12 14.1 0.2 14 40 28 51 19 54 0.86

2 9 0.06 54 5.7 0.6 17 31 59 73 52 79 0.80

3 9 0.092 83 5.1 1.2 16 35 98 114 89 122 0.77

4 9 0.14 1.3e+02 4.5 1.3 13 30 123 140 114 149 0.75

5 9 0.013 12 7.8 1.2 15 40 155 177 146 180 0.83

6 9 0.00065 0.59 11.9 1.1 5 36 174 207 170 208 0.89

7 9 0.039 36 6.3 0.7 17 40 248 268 239 271 0.83

8 9 0.033 30 6.5 1.4 13 31 272 290 262 298 0.75

9 9 0.03 28 6.6 0.4 18 40 307 326 298 329 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00014	0.12	14.1	0.2	14	40	28	51	19	54	0.86
2	9	0.06	54	5.7	0.6	17	31	59	73	52	79	0.80
3	9	0.092	83	5.1	1.2	16	35	98	114	89	122	0.77
4	9	0.14	1.3e+02	4.5	1.3	13	30	123	140	114	149	0.75
5	9	0.013	12	7.8	1.2	15	40	155	177	146	180	0.83
6	9	0.00065	0.59	11.9	1.1	5	36	174	207	170	208	0.89
7	9	0.039	36	6.3	0.7	17	40	248	268	239	271	0.83
8	9	0.033	30	6.5	1.4	13	31	272	290	262	298	0.75
9	9	0.03	28	6.6	0.4	18	40	307	326	298	329	0.88

Coding Sequence: ATGTGCTCTAAACGTTTTCCTACTCCTGAAAGACTTAGTAATCACAAAAAAGGACATATGGGACAAACTAATAAAAAAGTTGAAAGCGTTTTTAGTTGTGAACATTGTgataagaaatttaaaaatagtactggTTTTAAAGACCACTTACGTGTTCACACTGGCGAAAAGCCCTATGAATGTGAAATATGTCACAAGCGTTTTGCAAATAGGGGCAATTTTAGTAAACACAAAAAGATACATATGGGCGATGCAGGAAAACCTTTGCGGTGTAATAAAAAAGTTGAACGAATTTTTAATTGTGAACATTGTGATAAGACATTTAAACATAGATCTGGTTTTGATGCCCACATAAGTGTTCACACTGGCGAAAAAACCTATGAATGTGAGATATGTAACAAACGTTTTGGAAATAGTGGAAATTTGAATTCTCACAAAAAGATTCATATGGGCGATGCAGGAAAATCTTTGCAATGTCAACATTGTGATAAAAGATTCAAACGAAATGCTGAGCTTCGGAGTCATATGAGAGTACATAGTGAAATTGAAAATATTCATAACTGTGAATATTGTAGTAAGAAATTTCTTTATAAAAGTGAATTAGAAACCCATACTCTTCTTCATACTTTCGGAATGTCTTATAAATGCGATATGTGCTCTAAACGTTTTCATACTCCTGAAAGACTTAGTAGTCACAAAAACGGACATAAGagacaaaataataaaaatgttgaacgaatttttaattgtgaacattgtgataagaaatttaaaaatatttttgatttaaaatcaCACTTACGTGTTCACACTGGTGAAAAACCCTATGAATGTGAGATATGTCACAAACGTTTTGCAAATAGTGGAAACTTATTTAATCACAGAAAGATACATATGGGCGATGcagcaaaaactaaaaaatgtcaaTATTGTGACGAAAGATTTATACGAAATTCAGAACTTTGGAGGCACATGAGGGTACATACTGAAGAAAACTCCCAACAATCCTAA
Protein Sequence: MCSKRFPTPERLSNHKKGHMGQTNKKVESVFSCEHCDKKFKNSTGFKDHLRVHTGEKPYECEICHKRFANRGNFSKHKKIHMGDAGKPLRCNKKVERIFNCEHCDKTFKHRSGFDAHISVHTGEKTYECEICNKRFGNSGNLNSHKKIHMGDAGKSLQCQHCDKRFKRNAELRSHMRVHSEIENIHNCEYCSKKFLYKSELETHTLLHTFGMSYKCDMCSKRFHTPERLSSHKNGHKRQNNKNVERIFNCEHCDKKFKNIFDLKSHLRVHTGEKPYECEICHKRFANSGNLFNHRKIHMGDAAKTKKCQYCDERFIRNSELWRHMRVHTEENSQQS

Sequence clustering based on sequence similarity using MMseqs2