Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0069 6.3 8.7 0.5 17 29 44 56 35 65 0.86

2 10 0.0019 1.7 10.5 0.6 14 38 70 95 59 99 0.82

3 10 0.14 1.2e+02 4.5 0.3 17 31 101 115 94 119 0.79

4 10 1.3e-06 0.0012 20.6 1.5 15 41 129 152 122 155 0.88

5 10 0.03 28 6.6 3.0 18 38 160 177 154 182 0.90

6 10 6.5 5.9e+03 -0.9 1.3 12 23 184 195 177 199 0.75

7 10 6.6 6e+03 -0.9 0.9 18 32 216 230 207 237 0.77

8 10 0.01 9.5 8.1 2.2 14 40 243 266 229 269 0.84

9 10 0.55 5e+02 2.6 1.3 17 31 274 288 265 292 0.79

10 10 0.0085 7.8 8.4 2.1 9 43 291 322 289 323 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0069	6.3	8.7	0.5	17	29	44	56	35	65	0.86
2	10	0.0019	1.7	10.5	0.6	14	38	70	95	59	99	0.82
3	10	0.14	1.2e+02	4.5	0.3	17	31	101	115	94	119	0.79
4	10	1.3e-06	0.0012	20.6	1.5	15	41	129	152	122	155	0.88
5	10	0.03	28	6.6	3.0	18	38	160	177	154	182	0.90
6	10	6.5	5.9e+03	-0.9	1.3	12	23	184	195	177	199	0.75
7	10	6.6	6e+03	-0.9	0.9	18	32	216	230	207	237	0.77
8	10	0.01	9.5	8.1	2.2	14	40	243	266	229	269	0.84
9	10	0.55	5e+02	2.6	1.3	17	31	274	288	265	292	0.79
10	10	0.0085	7.8	8.4	2.1	9	43	291	322	289	323	0.87

Coding Sequence: ATGATAACCAACTTCttttggccaaaattggatGATTTGGATGTGGACGACATGTGGTGCCAACAGGACGTCACTACGTGCCACACGGCTGATGCCACAATATACATTTTGTATGCGCAATTTGAGGAAATCGAATGTGATATATGCCATAAACGTTTAAACAGAAAAAGTCTGTATCTTCACAGACAAGGGCATATGGAGGAGTCtacaaaaattattgaatgTCCACATTGCGATAAGAAGTTTAGATCTCGTGGTGCATTAACCTCCCACATGAGGGTTCATACTGGAGAAAAACCATTTGAATGTGATATATGTCACAAACTTTtcagttttaaaaataatttaaatgtTCACAAACAGGGGCATTTGGGAGaatctgcaaaaaaatttcaGTGCAAACATTGTGAAAAGAAATTCGTAAATAGTTCTAATTTAAAAGCTCACCTTGTAACACATACTAGCGATAGACCTTTTAAATGCGATTTATGCCACAAAAAATTACGCAATATCACAACTCTAAAACGTCATAAAATCAGGCATTCGGGAGAAGATGGAAAAGTACATAATTGTGAATATTGTAGTATGAAATTCTTTTTCAACAGTGATTTAGTAGCCCACAGACGTCATCATTCATTACCTTTTAAGTGCGATAAGTGCCCTAAAAGTTATGAAACTAATAATAAACTTAGTAATCACAAGCAAAGACATAGAAAATCCAATGCTGAACGGGTTTTTAATTGTGAACATTGTGATAAGAAATTTTATCGTAATTCTGGTCTTAAAATCCATTTACGTGTTCATACTGGCGAAAAGCCTTATGAATGTGAGACATGTCACAAACGTTTTACAATAAGAGGAAATATGACGATTCACAAAAAGATACATTTGGAAATAAATTGCGAATATTGTGATGAAAAGTTTCAACGAAATCAAGAGTTTCGGAATCACATGATGAGAGTACATGGTAACAAAAACACAAACAAATAA
Protein Sequence: MITNFFWPKLDDLDVDDMWCQQDVTTCHTADATIYILYAQFEEIECDICHKRLNRKSLYLHRQGHMEESTKIIECPHCDKKFRSRGALTSHMRVHTGEKPFECDICHKLFSFKNNLNVHKQGHLGESAKKFQCKHCEKKFVNSSNLKAHLVTHTSDRPFKCDLCHKKLRNITTLKRHKIRHSGEDGKVHNCEYCSMKFFFNSDLVAHRRHHSLPFKCDKCPKSYETNNKLSNHKQRHRKSNAERVFNCEHCDKKFYRNSGLKIHLRVHTGEKPYECETCHKRFTIRGNMTIHKKIHLEINCEYCDEKFQRNQEFRNHMMRVHGNKNTNK

Sequence clustering based on sequence similarity using MMseqs2