Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0062 5.6 8.8 3.3 18 38 11 28 2 33 0.87

2 9 0.00091 0.83 11.5 0.4 18 41 39 59 35 61 0.88

3 9 0.017 16 7.4 0.3 1 38 51 84 51 86 0.84

4 9 0.0017 1.6 10.6 1.4 3 31 111 137 109 145 0.88

5 9 0.0001 0.092 14.5 1.5 18 41 148 168 139 169 0.90

6 9 0.17 1.6e+02 4.2 0.6 18 28 176 186 170 210 0.86

7 9 8.2e-05 0.074 14.8 1.8 17 41 256 277 246 279 0.89

8 9 1.4 1.3e+03 1.3 0.5 17 29 284 296 277 307 0.78

9 9 0.43 3.9e+02 2.9 0.6 16 28 313 325 304 334 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0062	5.6	8.8	3.3	18	38	11	28	2	33	0.87
2	9	0.00091	0.83	11.5	0.4	18	41	39	59	35	61	0.88
3	9	0.017	16	7.4	0.3	1	38	51	84	51	86	0.84
4	9	0.0017	1.6	10.6	1.4	3	31	111	137	109	145	0.88
5	9	0.0001	0.092	14.5	1.5	18	41	148	168	139	169	0.90
6	9	0.17	1.6e+02	4.2	0.6	18	28	176	186	170	210	0.86
7	9	8.2e-05	0.074	14.8	1.8	17	41	256	277	246	279	0.89
8	9	1.4	1.3e+03	1.3	0.5	17	29	284	296	277	307	0.78
9	9	0.43	3.9e+02	2.9	0.6	16	28	313	325	304	334	0.80

Coding Sequence: ATGCATATGGGAGAATCTGCAAAAACTCACAATTGTCAATATTGTGAAAAGAAATTTGTCTATCATTCTAACTTAAAAACCCACACAAAACTCCATACTGGTGTAAAACTTTTTCAATGCGAATATTGTGAAAAGAAGTTTGTATATGGTTCTAAACTAAAAGCACACATTAACACACATACTGGCGAAAAACCTTATAAATGTGATGTTTGTCCCAAACAATATTCATTTCAAAGCAATTTAACTCAGCACAAAAAATTGCATATGGGAGAATCGGCAAAAATTTACAACTGCCAACAGTGTGATATGAAGTTTATATGTCGCGCTCAATTAAAGCAACACCTGAGGATTCATACTGGAGAAAAATTTGAATGTGATATATGTCACAATCGTTACCGTTATAAAAATGGTTTGGATTATCACAAGCAGTCGCATTTAGGAGAATGCAAATATTGTGAAAAGAAACTTTCAAGTGATGAAAATTTAAGAATTCACCTTAGAACACATATTGGCGAAGGTCCTTTTAAATGTAATGTATGTCACAAACGTTTTCGCTCTAACAGCTATTTTAAATATCACAAAATCAGTCATACCGAGGAAGCTGTAAGAACTAATAATTGTGAACGTAAATCTGAATTAATAAGCCACATACATACTGCCAAATACGATTTGCCCCATAAATGTGATATGTGCACTAAACGTTTTCAAACTCTTGAAAAACTTAGTGATCACAAAAAGAGCCACATCGGACAAGGTGAACGGATTCTTGATTGTGAACATTGTGAGAAAAAATTTACTCGTAGTTCTCGTCTTAAAGTTCACTTACGTACTCATACTGGCGAAAAACCCTATAAATGTGAGATATGTCAGAGGCGTTTTGCAGACAGTGGAAATTTTGCTAGTCACAAAAAGACGCATATGGGCGATGcagcaaaaactttaaaatgcgAATATTGTGATAAAAGATTTATACGAAATCTAGCTCTTAAGATGCACATGGGATTACATACTAAAGCAAACCCCAAACTATCATAA
Protein Sequence: MHMGESAKTHNCQYCEKKFVYHSNLKTHTKLHTGVKLFQCEYCEKKFVYGSKLKAHINTHTGEKPYKCDVCPKQYSFQSNLTQHKKLHMGESAKIYNCQQCDMKFICRAQLKQHLRIHTGEKFECDICHNRYRYKNGLDYHKQSHLGECKYCEKKLSSDENLRIHLRTHIGEGPFKCNVCHKRFRSNSYFKYHKISHTEEAVRTNNCERKSELISHIHTAKYDLPHKCDMCTKRFQTLEKLSDHKKSHIGQGERILDCEHCEKKFTRSSRLKVHLRTHTGEKPYKCEICQRRFADSGNFASHKKTHMGDAAKTLKCEYCDKRFIRNLALKMHMGLHTKANPKLS

Sequence clustering based on sequence similarity using MMseqs2