Lobt027952.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- ttk
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:201288967-201338729[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-19 1.5e-15 58.3 0.0 2 45 565 609 564 609 0.97 2 2 7.3 2.4e+04 -3.1 0.7 3 11 643 651 643 654 0.82
Sequence Information
- Coding Sequence
- ATGTCAGTGCAACAATTTTGTTTACGCTGGAATAATCATCAACCGAATTTTATTTCTGTCTGCTCTTCACTACTACACAATGGTACATTGGTAGATGTTACATTGGCAGCAGAGGGACGACAATTGCAGGCACATAAAATTGTTTTATCAGCATGTAGTTCGTATTTCCAGACCCTTTTTACGACCAATCCATGTCAACATCCCATTGTTATATTGAAAGATGTTCAATATGATGATCTTAAAACAATGGTTGATTTCATGTACTATGGCGAGGTGAATGTATCACAAGAACAGCTTCCTCATATACTGAAAACGGCTGAGATGCTTAAAATAAAAGGCCTCGCCGAAATGCCCACCGATCCTGCCAATTTAACAAAATCTGATAGTAAATCATCAAATGATGCTACAGAACTAGTGGGTAGTGGTGGAGGAAATGGCGGAAATAATGGACAAGTTGGGGGCAATAGTGGTGGCAATAATAGTAGTGGTGGCGGTGGACTTGGTAGTAGTAGTGGTGGTGGTAGCGTAAGTGATTCATTATGGGGTAGCACAGAATCACAATTtcaacaacaacagcagcaacaacagcaCCAACATCAGCAGCATCAACTGCAGttgcaacaacaacaacagcaacaacaacaacatcatcatcaacaacaacagcaacTATTACATACACAATTGCAAAATAGTCAAACACAAACCTCACAACAGCAACAtcagcagcaacaacaacaacatcatcAACAATTACGACGCACACCATCACCATTAGGCGCAGGCGCCTCACCGGCTACTAGACGAAAACGTCTAAGAAAATCATCAAATAATGGATCCGGCGATCGCACTAATTCTGAAGATCATAACACCTCTTTGGATGCAGCCACAGCCGGTGGTTTAACTTTATCGCAAATGAGTCAAATGTCTTTTGGTGGCGCAGCTACAAATAGTGCTCTTGGTGGTTTAGCAGCACATTCATTGCATGCAGCTAAATTACTTAAAGAATCATCTAATAATGACTTGGAAACTAATCCTCAAGATTCAGATAGTTTAGATGATACACATGCTCATGTACATATGCAAATTaaaccAGAAGTTGATATGAGCGGCGTACCACAGTCAATACCATTGGATATATCTGGTGCAACGACACCATCAGAACATGATGCTCCCAATTCCCAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTCGCTGTCATCCTGTCCCACCAATTTAATTGGCAATAACAACAATCAAAATACAAATACCAACAATAACAACAGTTCGAATAGTGATCAACAGCAGCAACAACGTCAACAGCACCAACAGGATTCTGTCGTTAGtcaacaacaacagcagcagcaacaacacTTGCAGCAATTACAACAATATCAACAGCAGCATCAACAGAACTCAGCATATTCACCCCAAATTATAACCGTTAGTGGTTATACAAATGCTGCAGCAGTGGCTGCTGCTCAAAATCTATCGCCGCCCTCTCCCCACGATGCCAATATGGTGCAATCAGTATATAGCCAAGGTCCAACACCCACCCAATCGCCCGTCGGTAATGCTTCGGGCAGTGGTGGGGTTAATATGGCCGGTGGCAATGCAGCAAATAACGCTAATATCAAACGTAAACGCTCTGTTAATCCACAAGGTGATGAAAATTTTATACGGGCTCTGGAGGCAGTTCGGTCGGGTGGCATAGGTTTCTGTAAAGCGGCCCGGCTGTATGGCGTAAATAATCGTACTTTGTGGCTGGAGTATAAAAAGCGAGGTTATCCGGTTTCAAGGCCTAGCATAAAATCGCGAGTGGTTAAACAGGAACCGAATCTCTCACCATCTCCCACGCCGCCTATGAATGCCGGCAATGATGACACTAATGAGAATTATGATCATATGGCGGCAGCTGTGGCGGCTGCACAGACAGCAGCATTAAATATGCAAATACCACCGACTTCCGATACCCCGACTCCTTCGCTAATGTGTACATCTCACCATGCTGGCACTACCGTTGGTGCTACCACTCACCCTACCATGGGTGTTATGAGTTTCTTAGATACCCGCCATATGGATTTTCCAGCTAGTTTACACTCAATGTCACGTCAACGTTATATTGATGCCACGGGTGCTGGTGGTGGGGCTGGGTCGGGCACAATTAATGTTAACCCAGCAGCTGCAATGAATTTACAGAGTATTAATTTTAACTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDATELVGSGGGNGGNNGQVGGNSGGNNSSGGGGLGSSSGGGSVSDSLWGSTESQFQQQQQQQQHQHQQHQLQLQQQQQQQQQHHHQQQQQLLHTQLQNSQTQTSQQQHQQQQQQHHQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGDRTNSEDHNTSLDAATAGGLTLSQMSQMSFGGAATNSALGGLAAHSLHAAKLLKESSNNDLETNPQDSDSLDDTHAHVHMQIKPEVDMSGVPQSIPLDISGATTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPTNLIGNNNNQNTNTNNNNSSNSDQQQQQRQQHQQDSVVSQQQQQQQQHLQQLQQYQQQHQQNSAYSPQIITVSGYTNAAAVAAAQNLSPPSPHDANMVQSVYSQGPTPTQSPVGNASGSGGVNMAGGNAANNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPMNAGNDDTNENYDHMAAAVAAAQTAALNMQIPPTSDTPTPSLMCTSHHAGTTVGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDATGAGGGAGSGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01165620;
- 80% Identity
- iTF_00892856;