Lobt027956.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:201382047-201407804[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-08 7.8e-05 24.1 0.0 8 39 391 422 389 426 0.87 2 4 3e-13 1e-09 39.7 0.0 5 44 442 481 439 482 0.93 3 4 0.027 89 4.7 0.0 27 37 511 521 507 524 0.90 4 4 8.5e-16 2.9e-12 47.9 0.0 4 41 550 587 550 589 0.92
Sequence Information
- Coding Sequence
- atgaatcATTTAAAGTGGATGGGCCACTCGGCCACAATATTTGATATACATAAAAACTTACGAGCTGATTTGAAAAGTTGTGAAGTTACTTTGGTGGCTAAGGGCCACTGCGTTAAAGCCCATCGTTTTGTTTTATCCTCGTGCAGTGATTTACTGCGCGGCCTTTTAAGCGATGTACCCATTGGAGAAGAGTGTTGTGTAATGGTACCCGATATAAAAGGCCATCTTTTGGATAACGTATTATCATTCATTTATTTGGGGGAATGTTCGTTATCTTCTACAAATTTATCTGAATTTTTGGAAACCATTAATATACTTGGCATAAAGAGTGCCATAAGTTTCGAATGTAATACAAATGCTTTGCAAGCAACACAAAATAGCAATGTAGGAACGGGTTGTGGTGCATCTAATGTGGTTGGTGGAAGTGCTGCTACTGTTATGCCTGCAAGAGGGGAAACAAGTGTTAGCCCAGATCTTTCTTTACAGCAGGAAGAATTAATGGAAACTCAAAATGTTATTCATTCGGATGAACAGACATCAAATACAAATACTGCTAATACTTCGAGTGGTAGCCGAGAATTGGATTTTTTAGATGTTTATCATGAGCCTCAACATAAAATCACATATTCCATAGAACCTGTGCCCGGAAATACGGCTGGCAATGAGTTTATTTTAACCGAAAACTCGGGTACTTTCACATTGACCCATAGTACTAAATTAGAATCGTCGTCGCGTGCTGAATCCACCAGTATGGAATTAACAGAAGACGATGAATGTGATTCTCATATAATTGAAGAATATAGTAGTGGTGATGAACGTCTTATACAAATTAGTGAAAGAgGATCAGAACAATCTGGTACCGTAGCCCAAGCAGTAGCAGCTGAACCAACTCCAGCAGCAATAACACAAACTATAAATAATCCCATTGCATCGACATCATCTACATCAATTATACAAGTAAAACCTAAGTTTAAGGCCTTTAAAATTATACCAAAATTGGAGCGTTCCGTTAATACTTCGGAATATGATTCTAAGACTGCAGATGACCCTATTTCTATATTACAAACGTCTAACGAAGGTTTTACTTTACTCAAAAGTGAACCCATGCTATCGAATAATGCATCTAACAACTTGTCAATGAATACAACTTACATATCAGCTACGGATTTAGCTTATCAAGCTATGGTTAATGAGGGTATGTCTCTGCCAAAGGCAGCTGTTAAATTTAATGTTTCCAAAACGGAATTATGGCGTCGTGTACGTTCTACGGGAGtagaaaatttatataaatcaCCAAAATTAGATCCAGAGAAAATAGATGTTATTGAATTAGCTTCTCAAGCGGTAATTAATGAAGGCATATCACTACAAAAAGCGGCTTTACGTTATGATATTTCTAAAACGGTTTTATGGCGAAGAGTGCGCAAACATCCTCAATATATGAAAATAGCACGGGAAAATCCTATAATATCTAAAGCCTATGAACGTTTAAAATCGGGGGAATCTCTTAAAAGTATATCACAAGATTTAGATATACCTATGTCGACGTTGCATCGTCATAAAGTGCGTCTCTGCCGGATGGGCCAGCTACCCGAATTTGTAACGTGCAAAAGACGTGATAGCATGTCTAAAGAAGATTTAAAACTAAAACTTGCCAAAGCGGTTCATGCCTGCGTTCACGAGGGTATGTCTCAGAATCATGCTGctaatttatttgaaatttccAAGAGTACTCTATGGCGACATTTACAAAAACGTGTAGCAGAAGCTGAAGCGGCCGAAACTTCAGAGGGTGTCGGTCACACTGTGTATATGGGTGAAGAGGCTATAATAAAACAGGAAgttattttatcttaa
- Protein Sequence
- MNHLKWMGHSATIFDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRGLLSDVPIGEECCVMVPDIKGHLLDNVLSFIYLGECSLSSTNLSEFLETINILGIKSAISFECNTNALQATQNSNVGTGCGASNVVGGSAATVMPARGETSVSPDLSLQQEELMETQNVIHSDEQTSNTNTANTSSGSRELDFLDVYHEPQHKITYSIEPVPGNTAGNEFILTENSGTFTLTHSTKLESSSRAESTSMELTEDDECDSHIIEEYSSGDERLIQISERGSEQSGTVAQAVAAEPTPAAITQTINNPIASTSSTSIIQVKPKFKAFKIIPKLERSVNTSEYDSKTADDPISILQTSNEGFTLLKSEPMLSNNASNNLSMNTTYISATDLAYQAMVNEGMSLPKAAVKFNVSKTELWRRVRSTGVENLYKSPKLDPEKIDVIELASQAVINEGISLQKAALRYDISKTVLWRRVRKHPQYMKIARENPIISKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLCRMGQLPEFVTCKRRDSMSKEDLKLKLAKAVHACVHEGMSQNHAANLFEISKSTLWRHLQKRVAEAEAAETSEGVGHTVYMGEEAIIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00892892;
- 90% Identity
- iTF_00892892;
- 80% Identity
- iTF_00892892;