Lvar020666.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- nfxl1
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001240.1:532130-536033[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 2.3e+04 -7.8 5.6 15 19 150 154 149 154 0.81 2 20 0.13 1.5e+03 -0.3 0.4 4 10 185 191 184 191 0.95 3 20 2.2e-08 0.00025 21.3 13.9 1 18 199 215 199 216 0.98 4 20 2 2.3e+04 -4.5 1.6 6 10 241 245 240 245 0.84 5 20 0.0022 26 5.3 4.9 1 10 251 260 251 260 0.99 6 20 0.2 2.3e+03 -0.9 1.5 5 10 295 300 295 300 0.91 7 20 1.1e-07 0.0012 19.1 12.2 1 19 306 324 306 324 0.97 8 20 1.3 1.4e+04 -3.5 0.4 1 8 349 355 349 356 0.59 9 20 1.2e-07 0.0014 18.9 10.7 1 18 359 376 359 377 0.97 10 20 0.11 1.3e+03 -0.1 0.5 1 10 386 395 386 395 0.74 11 20 9.1e-07 0.01 16.2 16.8 1 18 411 428 411 429 0.97 12 20 4.2e-08 0.00048 20.4 14.6 1 18 438 455 432 456 0.90 13 20 0.76 8.7e+03 -2.8 1.0 6 10 484 488 483 488 0.89 14 20 0.00055 6.3 7.3 4.2 10 18 502 510 499 511 0.90 15 20 0.014 1.6e+02 2.8 5.4 1 11 521 530 521 531 0.95 16 20 0.86 9.8e+03 -2.9 1.4 6 10 585 589 584 589 0.88 17 20 2.8e-05 0.32 11.4 5.0 1 12 595 606 595 606 0.97 18 20 0.64 7.3e+03 -2.5 1.3 14 18 618 622 618 623 0.85 19 20 0.0085 97 3.5 16.0 3 19 635 651 634 651 0.92 20 20 2.6e-06 0.03 14.7 11.3 1 16 701 715 701 721 0.92
Sequence Information
- Coding Sequence
- ATGGAGAAATTCATGCAGGCGCATTCAAACAATATGGCAGCTGCCCAACGAATAGCTGATTATGAATCAAGTTCTGAAGACGATATTGATGTGGACGAAAAAACCATTTTAGCGGCACTTTATCAGCATTACGAGCCAGCAACGAACGAAGGCCCAAGCACAGCCAACAACAGTCAATTGCAGAAGACTACAGCGTTTCTTGAAAACGCCCTCCACTCCGGCTCTGCGACATGTTTAATTTGTATTGGAAGTATACGCCGCAACAACTCAATCTGGAGCTGCAAAAATTGCTACGGCTTTTTCCATCTTAACTGTGTACAACGATGGGCTAATGATAGCCTTATGCAATTAAAGGTTCGTGCTGCTGACCGTCAGATGGATCAAGGACATTACAACCATTTAGGTCAATTCGTTCCGCCAAAACGACCGCGTGAATTGCACTGGTGCTGTCCTAAATGTCGCAAGGAATATGAACCGCAGCACAAGCCTACGGTATATGAATGTTTTTGCGGTAAAGAGATAAATCCACAAGCACAACCATTTCTTATACCACACTCTTGTGGCGAAATTTGTAACAAACAGCTGCAGCCTAACTGCGGTCATACATGCAAAATGCTCTGTCATCCTGGCCCATGTGCACCTTGTGCACAATACGCGCAAAATTCATGTCAATGCGGCCAAAATAAAAGATCAGGGCGCTGCCTGGATAAGAATTGGCAGTGTCAGACATTGTGCAAGGCGCTTTTATCCTGCGGTAAGCATGTATGCAATCAGCTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCCGACCTAACGTGGAATTGCCAACAAGTATGTGGCGCAAAGTATGATTGTGGTGTGCATAAATGCAGGAAAGTATGCCACGCCGGAGTGTGTGGAGAGTGTCAACTCGGGCTGCCACGAACATGTCCTTGCGGAAAAACGACTAAAGTTGGTCCTTGTACGCAAACAATTGAAAACTGTGGCGACACTTGCCAGAAGCTACTTGTATGTGGACTACATAGCTGTACTCAAAGATGTCATCGCGGTGCTTGCAACGAGTGTTTGGTAATTGTCAAAAAGGAATGTCGCTGTGGTATGCACAAGAAGGAATTGCCCTGCTCTAAGGAATTCATTTGTGAGACAAAATGTAAGCAAATGCGTGATTGCGGTAAACATCTTTGCAATAGAAAGTGCTGTGATGGTCAGTGTCCACCGTGTGAAAAAATTTGTGGAAAACAATTAACGTGCAACAAACATAAATGCCAATCAGTTTGCCACAATGGACCGTGTTATCCATGTAATCTGCAATCAAATATAAATTGTCGATGTGGTAAGACTAGAAAAACCGTGCCATGTGGTCGAGAAAGAAGCGTTCGAATTTCTTGTAAGGAACTCTGCCGTATTACATCAAAATGTCATCATCCAACTACACATCGCTGCCATAAGGGTTATTGTCCAGCGTGTAATCAAAAATGTGGCCTTAAAAATAGTGCTTGTGGTCACGTTTGTTTAGCCAAATGTCATGCCGCAGTAAGGGTCAAATTAACAACTTCTAGCGTTAAAGAGTCTGAAAAGTACGAGTTCAAAAATTTACCTCATCCGAGGTGCGAAGAGAACGTAACGGTCACTTGTATTGGAGGACATGAAATAGCTACCATGCCTTGCTGGAATTCAAAGCCAACCTCTTGTCAGCGCAAATGTAATCGATTGCTACTTTGCGGTAGCCATTCATGTGAATTGATATGCCATTCTGTTCCGGATATACACGATAAGCGTCAACAAGCAGACTGTGCACCTTGTGAAGAAGGATGCAATATACCACGTTCTGCAGGTTGTACACATCCCTGTAAGCGACCGTGTCACTTGCCACCGTGTGCGCCCTGCTCTGTTGTTATCAAAAGCAATTGCCATTGTGGTATCTCTCAAGTTGCATACAAGTGTAACGAATTCTATTCTGATGAATCCGAAGAAGATCTAAAAGTGCGACAGGAAAAATTTAAGAGTTGTGGTAATCGTTGCCTTAAAAATTTTCCTTGTGGTCATCGGTGCACTACAATATGTCATTCTGGAAAATGTCCTAACCCTGAGTTATGTCGCAAGAAGGTAAAAATTTTCTGCATCTGTAAGAATCTAAAACTTGAGGTATCCTGCGATAAATACCGTTCTGGCCAAACAAATTTGTCCTGTGATGATCAGTGTTCCAGTGCCCGTGCGAAAGCTGAACTTGCGCTAAAGGCTGAACAAGAGCAGCTTCGCCGTGAGGAAGAGAATAGAAATCGCATTGAACTGGAGAAGTTTGAAAAGAAATTTTGCAAACGTAAAGTGAACAAAGAACGTAGGGTGCACGTAGAAAAGAACAAAACAAAAACAAATTGGAAATTAATAGGGATAGTTTTGAGTATATTCATTGCAGTTTTAGCTGCGGTTGCCGTTGCATTCTACGCAGAAAGTTAA
- Protein Sequence
- MEKFMQAHSNNMAAAQRIADYESSSEDDIDVDEKTILAALYQHYEPATNEGPSTANNSQLQKTTAFLENALHSGSATCLICIGSIRRNNSIWSCKNCYGFFHLNCVQRWANDSLMQLKVRAADRQMDQGHYNHLGQFVPPKRPRELHWCCPKCRKEYEPQHKPTVYECFCGKEINPQAQPFLIPHSCGEICNKQLQPNCGHTCKMLCHPGPCAPCAQYAQNSCQCGQNKRSGRCLDKNWQCQTLCKALLSCGKHVCNQLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDLTWNCQQVCGAKYDCGVHKCRKVCHAGVCGECQLGLPRTCPCGKTTKVGPCTQTIENCGDTCQKLLVCGLHSCTQRCHRGACNECLVIVKKECRCGMHKKELPCSKEFICETKCKQMRDCGKHLCNRKCCDGQCPPCEKICGKQLTCNKHKCQSVCHNGPCYPCNLQSNINCRCGKTRKTVPCGRERSVRISCKELCRITSKCHHPTTHRCHKGYCPACNQKCGLKNSACGHVCLAKCHAAVRVKLTTSSVKESEKYEFKNLPHPRCEENVTVTCIGGHEIATMPCWNSKPTSCQRKCNRLLLCGSHSCELICHSVPDIHDKRQQADCAPCEEGCNIPRSAGCTHPCKRPCHLPPCAPCSVVIKSNCHCGISQVAYKCNEFYSDESEEDLKVRQEKFKSCGNRCLKNFPCGHRCTTICHSGKCPNPELCRKKVKIFCICKNLKLEVSCDKYRSGQTNLSCDDQCSSARAKAELALKAEQEQLRREEENRNRIELEKFEKKFCKRKVNKERRVHVEKNKTKTNWKLIGIVLSIFIAVLAAVAVAFYAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -