Lvar013272.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010002672.1:45324-49236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.028 2.2 9.2 0.0 1 23 137 160 137 160 0.96 2 13 0.22 18 6.4 2.0 2 23 209 231 206 231 0.96 3 13 0.049 3.9 8.5 0.7 1 23 370 393 370 393 0.91 4 13 0.085 6.7 7.7 2.9 2 23 443 465 442 466 0.93 5 13 0.0025 0.2 12.5 1.5 1 23 515 538 515 538 0.95 6 13 2.4 1.9e+02 3.1 0.1 2 14 557 569 556 581 0.86 7 13 0.00011 0.0089 16.8 1.5 2 23 589 611 589 611 0.97 8 13 7.1e-05 0.0056 17.4 0.1 1 23 702 725 702 725 0.96 9 13 0.00024 0.019 15.7 0.1 1 23 773 796 773 796 0.93 10 13 0.0015 0.12 13.2 4.3 2 23 846 868 845 868 0.97 11 13 0.035 2.8 8.9 3.5 1 23 940 962 940 963 0.93 12 13 0.06 4.7 8.2 1.5 1 21 1015 1035 1015 1036 0.95 13 13 7.9e-05 0.0063 17.3 0.5 2 23 1121 1143 1120 1143 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGCATGGATCTATGGAATATGTTTTCAACCGACTTTGTCGAAGGCGACGCCAACATCAATGATAATTTTAATCAAAAAGCCGATAATAACTACCAGCAACAATTCGATGAAAACGGTAAAATCAAACAGGAAATTCTCGACTCGGACAACGAACAGGATGATGAAATGAACGAAACGCAAAGCAACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGCACTTGAGCCGGTTGTTAAAATGAATGTAACGCCACAGGCAAATAACCGAGCTATAAACAATAGCTACATACCAGGACAACGGCCTACACCCTCACAGATAAACGCAACCGATGAAAATGGTATGCCGATAAACTACGAACTGGGTGTAATCTATATTTGTCCGGCTTGCAGTGAAGAATTTGTGGCACAAGACAAATGGAAAGCACACATGAACCAGCTGCACGACTACAATACAGCCCGCGGCTTGAATTTTGTGCGTGTCGATAAGTTGTATCACCAGTGCTTGGAATGTCAAAAGCATATAGCTATGCACAGTATGGAAAATCTGTTGAAGCACAAGTTTACACATCTGCCACATCGTTGCGTCAAATGCGCGCTTTGCATGAGACAGTACAAATACCGGCAGGACTTAATGGTTCATTTGCGCATGATGCATCGTGATGCTGTAATTGAACTAATGCGCAATGGTGCTAGTAATACGCTGGGTGCAACCTCAACGAGACACTATCCACCTCGGTCTTCATTTGGTGGTGTCGGTAGCTCTCTTGGTGGATCCAATGCCGTATCAAATAGTAATCGTCTATCCATTATGAATGTTAAAGCAAACGCAGTCGACATGTTCGACGCCGATGATAGCATAGAAGTTCGGAATGAACCAGAAATCGAAAACGAGCATGAGGATAGTTCAACCAATTATGCATTGCATTCGCTTTTTAACGACGATGAAGCAAGTCGCAGCTCATCACAGACATCTGGAAAGCGGGCACGTGAGCAAGGTAATGGCAAACGAGATGCTGCAGCATCTGGAATATCAAGTAGTAGAGAAGAGGTCTGCGAAGATTATATAAATTATCTTTGTCCACAATGTGGCACAGAGTGTGAAACGCGAAATCAATGGAGTCAGCACATAGAATTTGTACACGATTTTATGAGCCGTCGTGGTTTGAACTTTAAAATTATCAATAAAGAACAAGCACAGTGCATGGAATGCAATAAGTTGGTAGTGCCTAACAACATAAATACGCTCCAGATGCACAAGTTTAACCATTTGCCCCATAGCGAGTGGTTACGTTGCAAGTTGTGTTACAAAGGCTTTAAGGATCGTAAAATCTTGCAGAATCATCTGTTACAGCAACATCACTTAGACTCAATTGTTTCCACAAATGAAAGCAGCCAAACTGGTTTCGATGAAGGCAATGGCATGGATGACGATCAATTGCTTGAAGAATCAGTGCCTAAGCGCGCACGTACCGGAGGTGAATACAATTTTGAGCCACACATTGATTATTTATGTCCACATTGTGGGCTAGAGTTCTACGAGAAGAAACTATGGCGCAAGCACGTCATGAAAACGCATCAAATGAACGATTTAAATACACTCAACTTTTCCGTAGTAAACGATCGACAATTGAAGTGTAACGAATGTGAGAAAGTCATTACAAATGCCTACGGCATACAAAATGCACAACAGCATCGAATTACGCATTTGCCTTATAAAGCATTTGCACGCTGTCGCATTTGTCGTAAAACGTACACCGATCGTAAAGGTTTGATCAAGCATATGGCAACACGGCATCGCATTGGTTGGGGATCTAACAATGCTGGCTATAATGAGTCTAGTGATTCAGTCAGCAATCAACAACAAAAACATGTTAAAGCAAGTAACAGTGAACCGCGAAAACAAATTGTTACCGTAAAAAATCAGACCTATGAAATTGTGTATCTGGATGAAGATGACGGCGATGAGTTCAGTAGAAATGATGACGATACCATGTTCGGTACGGGTGATGAAGACTTTTTAGATATCGTTCCAAGTCGTTCCAAGCCAATTTCCACCACCCAACGGTTTAACTGCGTTGATTGTGGTTCAATATTTCCAAGCCAATCGGCACTACAGACGCATATTCGTGAGGAACACGAGTTTTTGGACTTCAATGATGTTCGGAACTCGAGTAATAGTACATCAAATACAGATAATAAAGATAGCTCAACAAGGAAAAATGATGACAGCGCTTCCATACCATTCGGCGAGCCAACAGGAGCTGAACGTCATTTTATTTTTTTGTGCCCGTCTTGCGGTGAAGAGTACAAGACTCAGTACGATTGGAGACGTCACATAAATGAGGTGCACAACTTCGATAAGCGCTTTTATTTAAATATGCATCAAATTGACAAATTTCGCTATCGATGTAAGCAATGCAATGATGTCGTTTGTAATCCAAAGCTTAAAGGATTGCAGGATCATCACTTCCGCCATTTGCCGTATAGGCTGTATCTTAAATGTCTTGTCTGTGGCACCTGCTACAATCACAAACCGAATATGATGACTCATCTACGTACGCGTCACAATATATTTGATGACGCTGGACCGGATCCGCCATATTCGCAACCTGAACCTCCAACTCCTAAGCTATTAACGGCATCGCCAATTTCGTCCGTTGTGGGACGGCCGCCAAAAACGCGACTTTTAGACTCTACTGTATCGACACGCCCTCCTGGACTGAACACAATTGAAGACAATATTTCGTACCACAATGCCGTTGACTTAGATTTTATAACATACTTCTGCCCAAAATGTAATCAGAATTTCGATTCACATGCTTTTTGGCGCAAACACATCGTCGAGCATCATGATTATAACAGTCGCGAAGGTCTAAACTTTCGACAAATCGATAACCATCATTATCTTTGCATGGAATGTTACAAACGTGTCACAGTGACGCACACTAAGGGCGCGATTGGTCAACTGCAATCACACAAGTTCCGCCATCTGCCCTACCGTTCGTTCAAGTGTCTAACTTGTAATGGTGAATTTGTTCGGAAGCAAATGTTCTTTAAACATTTAAATCGTGAAACAAATCGCTGCGACAATAAACCCATTGAAGATGCTGGAAGTTCGGAAAAAACTGAGACCGAACTGGTTGAAATCAATAACTTGGATAAAGGTAAAACGACTCAAGAAGAAAAGGAAACCTTTAACGTGGAAGATGATGACATAACATCAGTTGTTGAACAAACAAAAAACGATATTGAAGACGACGATGAATACGATATTGCCATGGCAAGCGATTCTATTCGTTTTGATCCAGACACATATAAATTAAAATGCCCTCAGTGTGGTTTAGAGTTTAATTCAAAGACCAGTTGGCGAGAACACATCAACACAAAACATGAACTGAATATCCGAGCAAATTTAAATTTTAACAAAATCGGCGAATCATTCTTCCAGTGTCGCGTGTGTGATGAAAAAATTGCCACCCAAAAATTGCACTTGTTACAGTTGCATTGTTTCAAACATTTGCCACACGGCGCCTTCGCACATTGCCAACTCTGCAGTCATGCAGGCTTTGGCGATATGCACGATTTGCAATCTCATATGCGTGCACGTCACCCACATGCCGTCGAAGTGACACAATCTACGGAAAAAGATGACAATGACATAACGTCAGAAGTACAGCAGCCTGATGGAATTATTGAGGATGAGGACGATAGCAATAGTCATCAGTTTATGCCGCCAATACCGCCCCATTTGCTTGGCGACGATGTCGACTTTGATGAGCAATATTTGCTGGGTTGA
- Protein Sequence
- MEGMDLWNMFSTDFVEGDANINDNFNQKADNNYQQQFDENGKIKQEILDSDNEQDDEMNETQSNRXXXXXXXXXXXXXXXXXXDFALEPVVKMNVTPQANNRAINNSYIPGQRPTPSQINATDENGMPINYELGVIYICPACSEEFVAQDKWKAHMNQLHDYNTARGLNFVRVDKLYHQCLECQKHIAMHSMENLLKHKFTHLPHRCVKCALCMRQYKYRQDLMVHLRMMHRDAVIELMRNGASNTLGATSTRHYPPRSSFGGVGSSLGGSNAVSNSNRLSIMNVKANAVDMFDADDSIEVRNEPEIENEHEDSSTNYALHSLFNDDEASRSSSQTSGKRAREQGNGKRDAAASGISSSREEVCEDYINYLCPQCGTECETRNQWSQHIEFVHDFMSRRGLNFKIINKEQAQCMECNKLVVPNNINTLQMHKFNHLPHSEWLRCKLCYKGFKDRKILQNHLLQQHHLDSIVSTNESSQTGFDEGNGMDDDQLLEESVPKRARTGGEYNFEPHIDYLCPHCGLEFYEKKLWRKHVMKTHQMNDLNTLNFSVVNDRQLKCNECEKVITNAYGIQNAQQHRITHLPYKAFARCRICRKTYTDRKGLIKHMATRHRIGWGSNNAGYNESSDSVSNQQQKHVKASNSEPRKQIVTVKNQTYEIVYLDEDDGDEFSRNDDDTMFGTGDEDFLDIVPSRSKPISTTQRFNCVDCGSIFPSQSALQTHIREEHEFLDFNDVRNSSNSTSNTDNKDSSTRKNDDSASIPFGEPTGAERHFIFLCPSCGEEYKTQYDWRRHINEVHNFDKRFYLNMHQIDKFRYRCKQCNDVVCNPKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNMMTHLRTRHNIFDDAGPDPPYSQPEPPTPKLLTASPISSVVGRPPKTRLLDSTVSTRPPGLNTIEDNISYHNAVDLDFITYFCPKCNQNFDSHAFWRKHIVEHHDYNSREGLNFRQIDNHHYLCMECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRETNRCDNKPIEDAGSSEKTETELVEINNLDKGKTTQEEKETFNVEDDDITSVVEQTKNDIEDDDEYDIAMASDSIRFDPDTYKLKCPQCGLEFNSKTSWREHINTKHELNIRANLNFNKIGESFFQCRVCDEKIATQKLHLLQLHCFKHLPHGAFAHCQLCSHAGFGDMHDLQSHMRARHPHAVEVTQSTEKDDNDITSEVQQPDGIIEDEDDSNSHQFMPPIPPHLLGDDVDFDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -