Basic Information

Insect: Leucophenga varia
Gene Symbol: -
Assembly: GCA_018903435.1
Location: JAEIFJ010000936.1:856629-859348[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0032 0.26 12.2 1.3 2 23 249 271 248 271 0.96

2 9 0.00063 0.05 14.4 2.0 3 23 351 372 349 372 0.95

3 9 8.9e-05 0.0071 17.1 2.1 1 21 385 405 385 406 0.96

4 9 0.0067 0.53 11.2 2.3 2 23 414 436 413 436 0.95

5 9 0.00014 0.011 16.5 0.4 1 23 442 464 442 464 0.98

6 9 0.0024 0.19 12.6 0.3 1 23 469 492 469 492 0.96

7 9 0.0003 0.024 15.4 0.4 3 23 500 521 498 521 0.95

8 9 0.14 11 7.0 1.8 1 23 526 548 526 548 0.96

9 9 0.13 10 7.2 3.2 1 23 553 576 553 576 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0032	0.26	12.2	1.3	2	23	249	271	248	271	0.96
2	9	0.00063	0.05	14.4	2.0	3	23	351	372	349	372	0.95
3	9	8.9e-05	0.0071	17.1	2.1	1	21	385	405	385	406	0.96
4	9	0.0067	0.53	11.2	2.3	2	23	414	436	413	436	0.95
5	9	0.00014	0.011	16.5	0.4	1	23	442	464	442	464	0.98
6	9	0.0024	0.19	12.6	0.3	1	23	469	492	469	492	0.96
7	9	0.0003	0.024	15.4	0.4	3	23	500	521	498	521	0.95
8	9	0.14	11	7.0	1.8	1	23	526	548	526	548	0.96
9	9	0.13	10	7.2	3.2	1	23	553	576	553	576	0.96

Sequence Information

Coding Sequence: ATGCCCTTAAATGCCAACGTACCTGATGCTATCGAAAGCGCCACATATTTTGATTATTTACGCCAATGTGTTGGAAATGAGCTGCCTGTGGCTAATATTTGCGGTAGCTATGCATATCCAATGCAAATATGTTTACGTTGCTGCAAAGCGCTCGAAGTCACTACACATTTTGTGCGTATGGCAAAAGAATCGGAACGTAAATTAGCAGTGGAAGCAAACAAAATAGCTGTGCGCGGCGGCAGGGTGGTGCAACAAACACAAGAGGTCGAACTGAAGCGTAAAGCGGTGAAATCCGTAGAAGAACAATATAGTCAACAATTTACGAAATTTGTGCAAAGTTATGAACCCCTCATCGAAGAAAATGTGCTATATATGCGCGGTACAAAAGTGCCACGTGTAGAGCCGCCATCCCAAAATGCAAATGCTACAACCAGCGACAGTGATATTATACTATTTGATGTTGTATATGATAATACCGTCGATGAAGATAATGAAAATGATGTTTCAGATACAAGAAACAATGAGACTTTTTTTGATGAATCTAGCTTAGCCGAATATGTAGATGCACTTTTCATGGCATTAAATGATAACAATACCAATAATATTGGCAATAGCTCCAATGCAGATGAGTGTATAAATAATATCAAAGCGGATTTGTTGAAATCAGTCGAAAACTTTAAAATTTCGGAAGTTAGGAATTCAAGTAACACGCTTAACCCTAGCACATACCTTAGACCTGAAATTTCATGTGATTTATGTAATTTTACAACAAGCGATCAGGAATGTTTAAACGCACACTATCAACGTGAACATAAGAAAAAGGAAACGTTACATGAACTTGGCGTGGCTAATAGTGGTAACAGTAACAATAACAACAACAGCAACGGTGGCACTGTTAGTCCAACATTTGATGAACGAGTTGCAATCTCATTTAAATGCCGTTCTTGCAATGATTATACTTCGCAAATGAAAACCAAAATGTGTCAACATCTTACAGAGCATCATAAGATTGAAAAAAATTATGAGCTTTTCTATGTGGAGCAACAACACTGTCCGGATTGTGAACGTATCTTTAAGGATATGAAATCATTACGCACACATTATACGCGTATACATCTTGCCGGTGGTAAACGAGACACGTCAAACGAATCCTTTACCTGTGACAATTGTACGAAATCATTCAATATGAAATCCAGTCTGTATAGTCATCAACGTTATTGCAAGACTAAGGATCCGGTTAGCTGTTCGTTTTGCCACAAACAATTCAATACGGTACGCAACTATGAATTACATTTGCAGAATGAGCACGCCGTTAGTACAGTGCATGAATGTGAGGTGTGCAGCAATGTATTCAAGACTGCCGATGCATTAGCTATACACCGTAAACGACATACCGAGCGACATTTTCAGTGTGCTGAATGTACGCTAAATTATATAAATGCCACTGAGCTTAAGGTGCACTACGAACGTACACATGTACGTCACGAAAAAGTCAATTGTGGCTATTGCGGTCAGGAATTTCAGAATCGTAGTCTACTGCGTGAACATGAGCAGCGATCACATCAGAAGAAGCTATTCAGTTGTGAAAATTGTGATTTTGAGACAACAATGCGTACGCGTTTGCGTCAACATCAATACGAGCACACTGGCTATCCATACAAATGTAATGTATGTCAGGAGGAGTTTGCCGAGCGTTGCAAAATACGTCAACATTCCAAAAAAATGCACGCTATCGAAATGACTGATGATGAACTTGCCGAAATGTTTCGTGAACGTTTGGGTTATACCAGTCGTCAGGATGCATTTTCCAAAGCTAATAATTCGCTCGAAATAACTGGCATTAGCGAAGAATGCTACAGAGAAATAAAGGAGCTGAATATAAACTATGACGATATGATAAGTGATCTCTTCACAAACAACAATGTCCTTGACAATCTTTTGGATTATATTCCATAA
Protein Sequence: MPLNANVPDAIESATYFDYLRQCVGNELPVANICGSYAYPMQICLRCCKALEVTTHFVRMAKESERKLAVEANKIAVRGGRVVQQTQEVELKRKAVKSVEEQYSQQFTKFVQSYEPLIEENVLYMRGTKVPRVEPPSQNANATTSDSDIILFDVVYDNTVDEDNENDVSDTRNNETFFDESSLAEYVDALFMALNDNNTNNIGNSSNADECINNIKADLLKSVENFKISEVRNSSNTLNPSTYLRPEISCDLCNFTTSDQECLNAHYQREHKKKETLHELGVANSGNSNNNNNSNGGTVSPTFDERVAISFKCRSCNDYTSQMKTKMCQHLTEHHKIEKNYELFYVEQQHCPDCERIFKDMKSLRTHYTRIHLAGGKRDTSNESFTCDNCTKSFNMKSSLYSHQRYCKTKDPVSCSFCHKQFNTVRNYELHLQNEHAVSTVHECEVCSNVFKTADALAIHRKRHTERHFQCAECTLNYINATELKVHYERTHVRHEKVNCGYCGQEFQNRSLLREHEQRSHQKKLFSCENCDFETTMRTRLRQHQYEHTGYPYKCNVCQEEFAERCKIRQHSKKMHAIEMTDDELAEMFRERLGYTSRQDAFSKANNSLEITGISEECYREIKELNINYDDMISDLFTNNNVLDNLLDYIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -