Lvar011996.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- ZNF574
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010000939.1:639914-642120[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.18 14 6.7 0.3 1 23 329 352 329 352 0.95 2 9 6.3 5e+02 1.8 0.5 6 23 362 379 362 379 0.93 3 9 0.0025 0.2 12.5 0.3 1 23 385 407 385 407 0.98 4 9 3.6 2.8e+02 2.6 0.9 1 9 428 436 428 437 0.89 5 9 0.00011 0.0086 16.8 2.0 3 23 463 484 461 484 0.94 6 9 0.014 1.1 10.2 0.6 2 23 496 518 495 518 0.97 7 9 0.00058 0.046 14.5 6.2 1 23 525 548 525 548 0.93 8 9 1.8e-06 0.00015 22.4 1.3 1 23 554 576 554 576 0.98 9 9 8.3e-05 0.0066 17.2 1.3 1 23 582 605 582 605 0.97
Sequence Information
- Coding Sequence
- ATGGATTCGGATAGATTCGGTGGATGTATTCTTTGTTTGGAAGATTTTTCTGAAACTCACAATTATATTGCATTATTTTCAAAGCAAGGATTAAAATTAGGAGTCTGTGATATATTGCAGAAAATCTTTCATTTCTTGGTGCAGTTGGAAAGTAACCAGAATTGTTCAAGGCAGATTTGTTCAGCTTGTTGGCAAGTCGTAAGGGACTTTAATGATTTCTACGAACGCATCTATACGGCTCATCATAAGACGAAAACTTCACAAAGCGCACAACCGACGGAAATTTTAGATGCGCTCAATGATAACTTTTTTGACATTAATGAAATAAAAGTGGAAGTGAACGAATTAGAGTTTCTACCCCAAATTGAAGTCCTTGAGGATCCAGTAATATTGACTGGTTCAATTCTAAGTGAAAATGATGGGGATACTTTGAAGACTTCTAGCCGGCTAAAGGTAGAGCCTGCACCAATTTCGAAGGCTAATTCTGATTCTGATGTCCCTCTATCTGACTATATATCGGTTAATTTAAAATCTGATTCTAATGACTGTGCAACGTCTTCACGGATGCAAAGTGATGCGAAAAGTGATGGAGTGCAACTTCGAAAGCGTCGAGGTCGTCCACCCAAGTTGCAAAAGAATACTTGTTCAGCAATTACGGCCAGTGAATCCGAATTGAAAAGAGAGCAAAATGAATGTAAAGAGGACCAAGATTATTTCAGCGATAGGAACGACATAGATATAGGTACTGAAGACAGTGATAATTCGAGTAGTTCTGAAGAAGACTCCGATGACGATGTATGGAATATTGGTGATAAAAATCAACGATTCGCCGAGATACCCAAACGTGTTGTTGTCAAACCGAAAAAGTATCGAAAGCGTGAGAGACCAATTGTTCCTCCGGTGCGTAGGACCCGAGAAGAGATTGAACGACGCAAATCTCAGCAAACGGAATACGACAAAATAATAGCAAAGTTCTTTGATAACTTTCCTTGTCCTGAGTGTAACTTATTGGTGCAGAACTTTGGTGACATGAAGCGACATTTTCGTTTGTCTCACAACGTAGAATCTGGCTACGTAACCTGCTGTGGAAAAAAATTTCATTTGCGCAAAGTACTGGCGGAACATGTACTATTACATTGGAATCCAGATCATTTCAAATGTGTTTCGTGCGGTCGCCTGTTTCCAGATTCTCGTAGATTGGAAATACATGAGAACACTCATACTAATCCCCCAGATAATAAGACTAAAAAAGATTTATCAGTGCGACAATCAGAATTTAAGTTCAGTTGTCCAGAGTGCAAAAAAAAGGTACTTGTTTTGCTTCCTACAGAACGAAAGTTAAAGGATCACATGAAATATGTTCATGATCCGGAAAGCGGTATTATCTGCGACAAATGTGGGAAGCAAGTACGAACTCAGTTTAATTTAAAGAAACATCATCAATTAGAGCACTCAGATGAGCCTCGGCCAGTACCGGTACCAATGCAATGTGAAATTTGTGGAACTTGGCTAAGACATATAACTGGTTTGAAACAGCACATGAAGACCATACATGAGGAAGGTGGAGGCGAACACCGGTGTCACATTTGCAACAAAACATCAACAAACGCCAGAGCTCTAAAGCGTCACATTTATCACAATCATGAATGCGAACGAAAGTTTAAGTGTACAATGTGTGAGAAGGCCTTTAAACGCCCACAAGACTTAAGGGAGCACACATCGACGCACACCGGTGAAGTGTTGTACACTTGTCCAAATTGTCCAATGACATTCTTTTCAAACGCCAATATGTACAAACATCGTCAGCGTCTGCATCGTGCGGAATGGGAGGCAGATCGCAAGAAACCTAACACCAACATAATGCGCCAGGCAGTTGGCGCCACGGCGGCAATGAAACAGCGAGGTGCTGCTGCTTTGAACCAGGTTTATCTTGCTAAAGATATTTTAACGGATTAG
- Protein Sequence
- MDSDRFGGCILCLEDFSETHNYIALFSKQGLKLGVCDILQKIFHFLVQLESNQNCSRQICSACWQVVRDFNDFYERIYTAHHKTKTSQSAQPTEILDALNDNFFDINEIKVEVNELEFLPQIEVLEDPVILTGSILSENDGDTLKTSSRLKVEPAPISKANSDSDVPLSDYISVNLKSDSNDCATSSRMQSDAKSDGVQLRKRRGRPPKLQKNTCSAITASESELKREQNECKEDQDYFSDRNDIDIGTEDSDNSSSSEEDSDDDVWNIGDKNQRFAEIPKRVVVKPKKYRKRERPIVPPVRRTREEIERRKSQQTEYDKIIAKFFDNFPCPECNLLVQNFGDMKRHFRLSHNVESGYVTCCGKKFHLRKVLAEHVLLHWNPDHFKCVSCGRLFPDSRRLEIHENTHTNPPDNKTKKDLSVRQSEFKFSCPECKKKVLVLLPTERKLKDHMKYVHDPESGIICDKCGKQVRTQFNLKKHHQLEHSDEPRPVPVPMQCEICGTWLRHITGLKQHMKTIHEEGGGEHRCHICNKTSTNARALKRHIYHNHECERKFKCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPNTNIMRQAVGATAAMKQRGAAALNQVYLAKDILTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -