Basic Information

Insect: Leucophenga varia
Gene Symbol: -
Assembly: GCA_018903435.1
Location: JAEIFJ010001211.1:185084-189145[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.98 78 4.4 2.1 8 23 183 198 182 199 0.93

2 12 4.9e-07 3.9e-05 24.2 0.7 3 23 206 227 204 227 0.96

3 12 0.052 4.1 8.4 1.5 2 23 268 289 267 289 0.97

4 12 0.028 2.2 9.3 0.7 1 23 372 396 372 396 0.86

5 12 1.2 98 4.1 2.9 1 20 403 422 403 424 0.91

6 12 0.0065 0.52 11.2 0.9 2 23 434 455 433 455 0.96

7 12 6.6e-05 0.0053 17.5 3.6 1 23 462 485 462 485 0.95

8 12 0.00013 0.01 16.6 3.1 2 23 493 514 492 514 0.97

9 12 0.018 1.4 9.9 0.0 2 21 541 560 540 561 0.93

10 12 0.0013 0.1 13.4 3.5 1 23 612 635 612 635 0.98

11 12 0.013 1 10.3 1.9 2 23 673 695 672 695 0.95

12 12 0.00012 0.0097 16.7 2.8 2 23 730 752 729 752 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.98	78	4.4	2.1	8	23	183	198	182	199	0.93
2	12	4.9e-07	3.9e-05	24.2	0.7	3	23	206	227	204	227	0.96
3	12	0.052	4.1	8.4	1.5	2	23	268	289	267	289	0.97
4	12	0.028	2.2	9.3	0.7	1	23	372	396	372	396	0.86
5	12	1.2	98	4.1	2.9	1	20	403	422	403	424	0.91
6	12	0.0065	0.52	11.2	0.9	2	23	434	455	433	455	0.96
7	12	6.6e-05	0.0053	17.5	3.6	1	23	462	485	462	485	0.95
8	12	0.00013	0.01	16.6	3.1	2	23	493	514	492	514	0.97
9	12	0.018	1.4	9.9	0.0	2	21	541	560	540	561	0.93
10	12	0.0013	0.1	13.4	3.5	1	23	612	635	612	635	0.98
11	12	0.013	1	10.3	1.9	2	23	673	695	672	695	0.95
12	12	0.00012	0.0097	16.7	2.8	2	23	730	752	729	752	0.94

Sequence Information

Coding Sequence: ATGATTTGTCTAACTTGTGACACAAGCGCAGCCAGCGCTGTACCACTTTATGAGCTTAATTCAACGCAAGCAAAAAAGTATCCTGATAAGCAATTACGCGATATGCTAAGCGAGCTAGTTGAGATGGAATCAAATATGGCATACGAGGCGCAGCTGCCACAACATCTTTGCGGCGACTGCATGCATAAACTTAACAACGCTTATGAGTTTGTTACGCAGGCACGGAAAGCCTACAAAAGATTGTTGCAGAGACTCAAACCGGAACTAAAGTTGGACATGGAAAACGACGATCCACCATTGGAACAATTTGTCGCTGTTAAACTAGAAGAACCTGGCAATGAAGAAATGGCACCCGTGGAACTAGCTGAAACAGTTTTGGAGCAACACATATCAGATCAACAGGACAATGATAGCAATATGCCAGCAGATGAATATGATGTATTTGACAAAGGAATAATTAAGAGTATCGCCAATGAAATAGAACAAGATGAGGATGGTGATGATGATGATCCGTTAACACTAAAAGCACAGAGAAAACGCAAAGCTAAAACATTTCGCTTGCGTAGCAGCTTAAAAGCACACAAAGAGAAACATCACGACGCGGAGAATCTTGCGTGTCCAGAATGTAAACGTAAATTTAGTCGCAAGGATAGCTTGCAAGCGCACATTAAAAAAATGCATGATCCAATTAATGATGCGGCGACAGGACAACAACAAAAACGTGTACCAACTATTTGCGAACGTAAGCAGGCCAAAGAGCTGGATGTGAATCTCTGTAAGCCACATGGTTGCAAGCTGATACAATGTATGATATGCTTGGAATATTTTACGAAAATAGCTGAATTGTGTCATCATTTAGCTACACATAACCGTATAGACAATAAAACTTTTGCTAAACGTACAGAAACACTAAAAGAAATTGCCGAATCATACTATCCCGATGTAAAGGAAGAACTCACAGAAGACGCATTATACGCACGTATACAAAAAGATCTTAGGGCGGAAAAATTTGATTATTTCTATTCAATAACCAATCAGGCGGGCTATGAATTGAGATTAGAAAGTTCTGATACGGACGAAGAAGATAATAGAAAGTTAAAAAAGAAATCTTTATATGCTTGCGATTTGTGCGCAAATGTCACGTTTAGTCGTAGATATCAACTCTTTGAACATCAGCGGGAGAAACATGCATGGTCAGAGGCGCAACATGTCTGTCGTCGTTGTGATGCGCGTTTTCTAAGTAAATCTTTGCTACATCATCATTACGAGTCGCAATGTCGCAATCCGTTAAAACATTTACGTTGTAACAGATGTCCGCTACGTTTTCGCTGGAAGCAAAATCTTAAAGCGCACTACATGGAGCACAGGAATAGGATACAATCGTATAAATGCGATCAGTGTAATCGTACTTTTAAGGATAAGAAATCATTGTCAACACACTTTAATCTTACTCACACCGATCTATCAAGTCTGCAACGCTGCAAATGGTGTACACGCGTATTTTATCGCCGCGAAAACCTGTTAAAACATTTTAAGCGACATGGTTTAAAGGAATGTGATTTGCCTCTGGCTGAAGTATTACTTAACGCAACAACGCAGCCGAATGGTGCTAAGCAAATTAGCTGTAAAATTTGTCAATTGCAATTTGAAAATATTGTCGAATTGCGTGCACATATAATAATGGAATTAAAACTAAATTTACGCGCACATCTAAACTATGAATCATTAGCAAATTATTCGATAACAAACGAAGCTGGCTTTGAGTTACATTTAGACGATTCGGAAACGGATAATGATGAAACGACGGCGGCGGTGACGACCACCATGATGCCATATAAATGTGAAATTTGTCAAGTGCAATGTCGTCGACGCTATGAAATGTTTCAACATCAGCGTGTAATGCATGCATTTGAACCTTTGCCGCATAACTGCACAAATTGCATATTTAAAACTGTTGCCAAAAACATACTAGATCATCACGAGCGAACGCATTGTCAAAATAAAGAAAAGAAACTAACTTGTAAACATTGCAGTTATAGATTTATGTGGCCAGAAAATTTAGAACAACATCAAAAATTGCAACATGCTGATTTAATTCAAACAAAGAGTACTGTTGCTATAAATGGTGTCACACCGGAGCAGACTGAAGTGCTGGAAACTACGAAATCTGCTACAGCAGAACTGTTAAATTGTCCACATTGTGATCGTACTTATATGCATCAATCGCGTTTAAATAATCACATACGCGATGTACACAGTGAAGAAAGCGAGGCTAATAAAATAAAGAAAAAAGGATGCAAAACGTAA
Protein Sequence: MICLTCDTSAASAVPLYELNSTQAKKYPDKQLRDMLSELVEMESNMAYEAQLPQHLCGDCMHKLNNAYEFVTQARKAYKRLLQRLKPELKLDMENDDPPLEQFVAVKLEEPGNEEMAPVELAETVLEQHISDQQDNDSNMPADEYDVFDKGIIKSIANEIEQDEDGDDDDPLTLKAQRKRKAKTFRLRSSLKAHKEKHHDAENLACPECKRKFSRKDSLQAHIKKMHDPINDAATGQQQKRVPTICERKQAKELDVNLCKPHGCKLIQCMICLEYFTKIAELCHHLATHNRIDNKTFAKRTETLKEIAESYYPDVKEELTEDALYARIQKDLRAEKFDYFYSITNQAGYELRLESSDTDEEDNRKLKKKSLYACDLCANVTFSRRYQLFEHQREKHAWSEAQHVCRRCDARFLSKSLLHHHYESQCRNPLKHLRCNRCPLRFRWKQNLKAHYMEHRNRIQSYKCDQCNRTFKDKKSLSTHFNLTHTDLSSLQRCKWCTRVFYRRENLLKHFKRHGLKECDLPLAEVLLNATTQPNGAKQISCKICQLQFENIVELRAHIIMELKLNLRAHLNYESLANYSITNEAGFELHLDDSETDNDETTAAVTTTMMPYKCEICQVQCRRRYEMFQHQRVMHAFEPLPHNCTNCIFKTVAKNILDHHERTHCQNKEKKLTCKHCSYRFMWPENLEQHQKLQHADLIQTKSTVAINGVTPEQTEVLETTKSATAELLNCPHCDRTYMHQSRLNNHIRDVHSEESEANKIKKKGCKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -