Lvar015867.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010000935.1:2593337-2596936[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.7 2.1e+02 3.0 2.0 2 23 283 305 282 305 0.91 2 16 5.2 4.1e+02 2.1 1.1 1 23 312 337 309 337 0.84 3 16 0.58 46 5.1 1.7 2 19 348 365 348 367 0.90 4 16 0.0057 0.45 11.4 0.3 1 20 437 456 437 458 0.93 5 16 1.2e-05 0.00092 19.9 0.8 1 23 463 486 463 486 0.95 6 16 0.0003 0.024 15.4 4.0 1 23 490 512 490 512 0.98 7 16 0.25 20 6.2 0.0 1 20 520 539 520 541 0.93 8 16 0.0037 0.29 12.0 2.5 1 22 560 581 560 584 0.91 9 16 0.072 5.7 7.9 1.2 1 20 589 608 589 610 0.89 10 16 0.021 1.6 9.7 4.5 1 23 624 648 624 649 0.95 11 16 0.002 0.16 12.8 1.7 1 23 678 701 678 701 0.96 12 16 0.004 0.32 11.9 0.3 2 23 707 729 706 729 0.91 13 16 0.0012 0.097 13.5 0.2 2 23 733 755 732 755 0.96 14 16 0.0012 0.094 13.6 2.4 1 23 761 783 761 783 0.96 15 16 0.012 0.97 10.4 1.4 1 23 787 810 787 811 0.96 16 16 1.2e-06 9.8e-05 22.9 1.4 1 23 816 838 816 838 0.98
Sequence Information
- Coding Sequence
- ATGTCGGAAATTATTTGTTTACATTGCAAGACAGCAATCAAAAATAATAAATATTATAATATATTCGATGAGCTTGGTATTGAAGTGGAATTGTCGACATTGTTAGAAAAATATTTTGCAATAAATGTTAAACAAAATGCAAAAGAGCAGCAAGTGCTCTGCGAAGATTGCCTAAATAAACTCATAGAAGCATACGATGTGGATGAGCATGAAAAAACAACGTCGGAGCTGTTGGCAACTACTGAGGAAACAAAAAAGCCAGCTGCCAATGAAACGTACATCAAGGATTCGCCTGACGATAATGAAATTATTGTCATATCAACAACGCCGTCGCCGGAATGTGCTATACAAACAAATGTTTCAAATGAGCAAACAAAAAATGAAGAGGAAACAACTGAGCATATTACAGCAAAATCGAAACGCAAAAGTAACTTAGTAAAACGCGAGGAACCGACGTCACCCAAGTTACCATTGACATTGGAAGATGAAATTGTTGCTCTCTTCGAGGAAGTTGTTGCCGATGGTGAAGTGGAAGTTTCAGTCAATGATGAATTCGTTTTACCGGACAGTGATGCTAACGAAACGGAAAATGAAGCTGACGATCCTTTAGAAGAAGAATATGAATATGAAGTATATGAAGTCGAAGACACAAGAGACGAGTTGGAAGATTACGTTGAGGAAATTATGGAAAATGCAGAAGTTAATGCAGAAAATGATAAGAAAGAAGTACAGCTTTGTTTGCTGTTGCCGCTTACGGAAAATCCGCGAGAACCCATCAATGTTGAATCTTATCTCAATGAATCTGTTATAAGTGATTTTACTACAATAAAATTTAATTGGAATACTGAGTGCAGCCTATGTTCAACAAAGTTTCTTAAATTTGAGCATTTATTGGCACATATCTACCAAAAGCATAAAGAAACATACAATTGCTTTACTTGCCCTATAGAGCGTTGCATTTTAAAGCTAACAAATGAGAAACAATTGACACAACATTTAATTCTGAGGCATGCACCCTTGGATAATTTACAGATTTACGGTCGTTGTACTGTGTGCAAAATGAGTTTCTCTAATTTTGCAATACTCAATAAACATTCTTGTGCGCGCATGATAAAACGTCATCGTGGTATGCGTTTATATTGTGATATGTGCGAACTTAATTTTGCATCAATGCGTCGTTTCGTGTTTCACATGCAATTTCACTTGGAACAACATCGTCCGCAAAAATGCTTAATTTGTAATTATACAAATGAAAATATTGAAAAACTGTTTGAGCATGTAAGCTACGAGCATGAATCAACTGACTTATATGCATGTAAAGTTTGTGATCGCATTTTTCAAGATGCAGAAAAGTTGAGTAATCATAAACATATTGATAATGCTGATTTTAATTGCAAGGATTGTAATAAAGATTTTCCTTCTAAATCGCGTCTTAATGCACATATTAAAGCTACGCATGCGCCATTCTTTACATGCCATTTGTGTAAAAAAGAGTTTATTAGCTTAAATGATTTTAAAAATCATCAAAAGTGGCACAAGACAACAACAACATCAATACATTCATGCAGTAATTGTGGACTTGTTAGTGCCGATCGTGTTTTGTTATTGGAGCACACCGCAGAGGAAGCTACCGAATGCTTTGGTGTTGGCATTGATGAGGAAATTACCAGTTATGCTTATACTTGTGAATTTTGTTCGATGGATTTTAAAAGTAAATGTAACTTAAAATTGCATCGTGCATCTGGTGTGCATCTTGATAATCAATATGTATGTACGCCATGTAATAAAACTTTTTCAACTGCAAAACAATATAATCCGCATAGAAATCATAGATCGAGTACAACAAGAACGGCAAATATAATCTATGTTTATATGTGTAATGCCGATAACTGTGAGCAATGCTATTCGCAGTGGAATTCGCTTTATATGCATAAAAAGCGACATCATAGCGCAACGAAACGTAAACAAAGTGAATTGAACAATGAAAAGGAAACAACTGAAACGAAGAGCATTGAAGAGAAAAAGAAAAATTTCGTTTGTCAATTTTGTAATAAGAAATGTCCATCGCAAATGTCACTTTCTGTACATATTGCACGTAGTCATAATAATAGTAACGTTTCCTGTGAATTTTGCAAGGCCAGTTTTAAGGAGGAAAGTGCGCTTAAGAAACATGTTGATTATATGCATATACCAATTGAGTGTTCAGTATGTTTTAAAGTAGTTAAAAATCAACGTAATTATGATGTGCATCAACGCGTTGTACATTTGGCTGAAAAGCGTTACTTTTGTAATGTTTGCCAAAAGGGTTTCTTTCATAAGAGCGACATGGAAGTTCATGAAAAGTTACACGAAAAAACTTATTCCTGTACATCATGCGATTTTGAAACAAGCTATAAAAACTCACTTGAAATTCATATAAGCAGCGTGCATCATAAGGAATTTAATTTTGAATGTCCAGTTTGTCAACGAAAGTTTGCACGAAAACATGCTCTAAATGTACACATTAAACGACATTCAAGTACACAGAAATTACTTTGTTCGGATACACTTAAGGATGATGGCTGCAGCAAAGAGAATAATATTGCGCATGACGATATTAAAGATACTTACGAATATGTTTTACTAAAGGATTAG
- Protein Sequence
- MSEIICLHCKTAIKNNKYYNIFDELGIEVELSTLLEKYFAINVKQNAKEQQVLCEDCLNKLIEAYDVDEHEKTTSELLATTEETKKPAANETYIKDSPDDNEIIVISTTPSPECAIQTNVSNEQTKNEEETTEHITAKSKRKSNLVKREEPTSPKLPLTLEDEIVALFEEVVADGEVEVSVNDEFVLPDSDANETENEADDPLEEEYEYEVYEVEDTRDELEDYVEEIMENAEVNAENDKKEVQLCLLLPLTENPREPINVESYLNESVISDFTTIKFNWNTECSLCSTKFLKFEHLLAHIYQKHKETYNCFTCPIERCILKLTNEKQLTQHLILRHAPLDNLQIYGRCTVCKMSFSNFAILNKHSCARMIKRHRGMRLYCDMCELNFASMRRFVFHMQFHLEQHRPQKCLICNYTNENIEKLFEHVSYEHESTDLYACKVCDRIFQDAEKLSNHKHIDNADFNCKDCNKDFPSKSRLNAHIKATHAPFFTCHLCKKEFISLNDFKNHQKWHKTTTTSIHSCSNCGLVSADRVLLLEHTAEEATECFGVGIDEEITSYAYTCEFCSMDFKSKCNLKLHRASGVHLDNQYVCTPCNKTFSTAKQYNPHRNHRSSTTRTANIIYVYMCNADNCEQCYSQWNSLYMHKKRHHSATKRKQSELNNEKETTETKSIEEKKKNFVCQFCNKKCPSQMSLSVHIARSHNNSNVSCEFCKASFKEESALKKHVDYMHIPIECSVCFKVVKNQRNYDVHQRVVHLAEKRYFCNVCQKGFFHKSDMEVHEKLHEKTYSCTSCDFETSYKNSLEIHISSVHHKEFNFECPVCQRKFARKHALNVHIKRHSSTQKLLCSDTLKDDGCSKENNIAHDDIKDTYEYVLLKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -