Lvar003397.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001870.1:6855401-6859614[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.5 2.8e+02 2.6 2.0 1 23 191 217 191 217 0.74 2 12 0.0015 0.12 13.2 1.0 1 23 223 246 223 246 0.97 3 12 1.3e-06 0.0001 22.9 0.7 1 23 251 274 251 274 0.96 4 12 0.0002 0.016 16.0 3.2 1 23 279 301 279 301 0.96 5 12 0.087 6.9 7.7 2.2 2 23 308 329 307 329 0.94 6 12 0.0011 0.089 13.6 3.8 2 23 337 359 337 359 0.95 7 12 0.0034 0.27 12.1 1.5 1 23 365 388 365 388 0.94 8 12 0.006 0.47 11.3 0.5 2 23 399 421 398 421 0.95 9 12 0.00016 0.012 16.3 0.2 1 23 453 475 453 475 0.96 10 12 1.4e-05 0.0011 19.6 4.0 1 23 482 504 482 504 0.98 11 12 1.8e-05 0.0014 19.3 0.7 2 23 511 532 510 532 0.98 12 12 0.0051 0.4 11.6 6.4 1 23 551 574 551 574 0.98
Sequence Information
- Coding Sequence
- ATGGAAACCTGCCGTACTTGTGCTAAATGTGATTTTGAGAGTGATGATAGCAATTGGTTTGATTTATTTCATCCAAATTGTAATATAAATTTAAAAAATGAAATTGCACAAATACGTATGGAGTTTTCTTATTGGAAATTAAAGATTTTTGCAAATGATGGACTACCACAAAAAATTTGCTCCGACTGTTTTAACAAATTCTGCACAGTGTATACATTTCGTTTGCGCTGTCAAGAGGCACAACTTAAATTATCAAATATTTTTGATAAAATCGAAACAGGAACGCTGGAGGATGAAAGTCAAGAAACAGAAGAAACCAATGAAATAAACTTCGAATCCATAGAAACGGTTTCAATTAACGAAATTAAAACAACAACAAATGCTGCCGCAACAACAACAACAAACACTGCTGAGATTTATTACGAATTAGTAGAGGAACCAACTACTTCTCCTCAAGCAGATGAAGTTGAAATAACAAACGAAAAGACATTTGAAAACACCGATTTACATGATGATGATGATTTTCAATATATAAAATCTACAGAAATTATTATGAATAATATTATAAAATTTTCCTGCCAATATTGTTATAAATCTAAACGAAATTATCAAAATCAAAATGAACTGCTTGAACACATTTTAAACGTACACGATCAAAAGCAACCGTATAAATGTTCTGATTGCGAAGCCTGCTTTCAGGATGCTGCATCTCGAACTGTGCATATGACTCGGGACCATGTCGAAAAGAATTTCGCTTGTGAAGTTTGTGGTAAACAATATTCGGATCGTTATAATTTAAAAAATCATATTGAAAAATTTCACAGTGAAACGGATTTTGAGTGTAATATGTGCGATAAACGATTTTTTACGCGTAAAAGCCTTAATTATCACAGTAAATGGCATAATCCGAGTGCTCAATTGAAATGTAATTATTGTGATCGTCTTTTTATCAATCGAAAAAAATGCGAAGCACACGAAGCGACACATACCGGCATAAGGAATAGTGAAACTTGCACTTTTTGTGGAAAATCTTTCATGCATCTGAAGACACTGCGATATCACATCTATCGACAACATGGTGGCGAGAAACCCTACAAATGCAGTCATTGTACCGAAGCCTTTGCTTCGTATGGTGAAAAACGTCTACATATGCTGGATAAGCATGCTGAAAATCTGACCGCCATCGAAAGAAGTGAATGTATGTTCTGTAGGGAGCGTTTCGCGAATTTAATGGATCTTGCAACACATATGAAGCAATCTCACGCACAGTGTGGCACGAAAACGGATGGTGGTATGATTATAAAAAATAATAAACGTGTTCTACAACAAAAACGTACCAAGAAATTTTCCGGAATATTTCGTTGTAATGTTTGCGATGCACGATTTAATATGAAAACTGCATTAGAGCGACATGAAGCTGTCCATTCCGCTGAGGGACGTCCACATAAATGTTTGCAATGTGCGAAAAGATTTAAACGTTCGCAGGATTTAAATTGGCACATGAAAACGCATTCCAGCGAAAGTAGTAATCAATGTGATATTTGTGGTAAAAGTTTTGCGCTTAAATATGTACTTACGCAGCATAAACGAAGTCATGAAGTGCTTGAAAAAAATTCAAATGTACCATATGCAATCGTGCGAAAATCGTATTATAAATGTGATCTTTGCAGTGAACACTTTGTAACGCATATCAAATTTAAAACTCATATGAAAAAGATGCACAGTGACGAAGATTCCATGAAATTCACATTGCCTGTGGATGAATTCAGTTATTCAATATTAATGCCTGAAAATACTTCAATATTAATGGACATTGCTCAGAAAAAAATTAATAAAAATTAA
- Protein Sequence
- METCRTCAKCDFESDDSNWFDLFHPNCNINLKNEIAQIRMEFSYWKLKIFANDGLPQKICSDCFNKFCTVYTFRLRCQEAQLKLSNIFDKIETGTLEDESQETEETNEINFESIETVSINEIKTTTNAAATTTTNTAEIYYELVEEPTTSPQADEVEITNEKTFENTDLHDDDDFQYIKSTEIIMNNIIKFSCQYCYKSKRNYQNQNELLEHILNVHDQKQPYKCSDCEACFQDAASRTVHMTRDHVEKNFACEVCGKQYSDRYNLKNHIEKFHSETDFECNMCDKRFFTRKSLNYHSKWHNPSAQLKCNYCDRLFINRKKCEAHEATHTGIRNSETCTFCGKSFMHLKTLRYHIYRQHGGEKPYKCSHCTEAFASYGEKRLHMLDKHAENLTAIERSECMFCRERFANLMDLATHMKQSHAQCGTKTDGGMIIKNNKRVLQQKRTKKFSGIFRCNVCDARFNMKTALERHEAVHSAEGRPHKCLQCAKRFKRSQDLNWHMKTHSSESSNQCDICGKSFALKYVLTQHKRSHEVLEKNSNVPYAIVRKSYYKCDLCSEHFVTHIKFKTHMKKMHSDEDSMKFTLPVDEFSYSILMPENTSILMDIAQKKINKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -