Lvar006400.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001211.1:139087-142242[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.6 6e+02 1.6 0.1 1 16 54 69 54 71 0.85 2 18 0.00015 0.012 16.4 3.6 1 23 189 212 189 212 0.93 3 18 2.6e-05 0.0021 18.8 1.8 1 23 219 242 219 242 0.96 4 18 0.0073 0.58 11.1 1.5 2 23 277 298 276 298 0.97 5 18 0.62 49 5.0 0.7 1 23 381 405 381 405 0.84 6 18 5.1 4.1e+02 2.1 1.5 1 20 412 431 412 433 0.89 7 18 3.6 2.9e+02 2.6 6.1 1 23 442 464 442 465 0.92 8 18 0.00059 0.047 14.5 1.8 3 23 474 495 473 495 0.96 9 18 0.004 0.31 11.9 2.8 2 23 502 523 501 523 0.96 10 18 0.0011 0.086 13.7 0.0 2 21 550 569 549 570 0.94 11 18 0.0083 0.66 10.9 2.8 1 23 623 646 623 646 0.97 12 18 3.8 3e+02 2.5 5.5 1 22 653 674 653 674 0.95 13 18 0.025 2 9.4 1.1 2 23 684 706 683 706 0.94 14 18 0.0015 0.12 13.2 2.5 2 23 740 762 739 762 0.94 15 18 0.00014 0.011 16.5 0.7 1 23 779 801 779 801 0.96 16 18 0.0062 0.49 11.3 3.0 1 23 807 829 807 829 0.97 17 18 2.9e-05 0.0023 18.6 2.4 1 23 835 857 835 857 0.97 18 18 4.6e-05 0.0036 18.0 3.1 1 23 863 885 863 885 0.98
Sequence Information
- Coding Sequence
- ATGTTTTTATGCCGTACTTGTGACACGATTACAGCTGTCGAGCTATATGAGCTCAAATCAGCGGACAATGCAAAGTATCCGGGAAAGCAGCTATTGGACTTGTTGACGGAATTAATTGAAATAAATAAAAACATGACATATGAGTCGCAATTACCACAACACATTTGCAACAATTGCAAAGAAAAACTAAACAACGCCTACGACTTTGTGATACAGGCTCGTGAGGCAAATAAGCGACTGCTCGATGGCCTAAAACCAGATGTAAAATTAAACACAAACAAATGTTGTCTACAAGAATTACCGCTTGAGCAATTTGTTGATGTTAAACTAGAACCAGGCGCTGGTGAAGAGACAAATCCAATGGAATTTGGTACGACAAATTTTATGGAGGAGGAAGAGGACGAGCAAAAATCAGATCTGGAACATGAAGACATTGAGATGCAGCACTTTGAAAGTGAGAGTAGCGCCGCAGAGCATGATGAGCAGCATGATGATCCTCTAACAATAATGAAAGATAGCAGTAGAAAACGCAAAACAAAAGCAAACAAAAAAGCTAAACAATTATTTAAATGTAATCAATGCAGCAAAACTTTTCGTTTGCGACATAATCTAAACGCGCACAAACTTGCCAATCATGCCAAAGTCAAGGAGGCGCATGAATGTCCTGAATGTAAGCGTAAATTCAATCGTGAAGAAACATTACAACAGCATTTAAAACAAGCACACACATCAATGGATGGTGGTCCGAAGAGTGCTACCATTACTGAACGTAAAATGGCAAAGGACATTGATATACATCTTTGTAAGCCACATGGCTGCAAGGTGATACAATGCATGATTTGTATGCAACATTTTACAAAAATATCCGAATTACGTACTCATTTGAGAGTACATCCCGCCATTGATACATTCGCAAAGCGTACCGAAACATTACAAGAGCTTGCTGAACTATTTTATCCAACTATGAAAAAGGATATTACAGAAGCAACATTATTGGAACGCATAAACAAAGATTTGAAAGCGAAACATTATATTAATTTCTTCTCAATAACCAATCAGGCTGGTTATGAGTTAAGATTAGAAAGTTCAGATTCGGATAGTGATCAAGATAGTGGCGGTAAGATATCGAAAAAACATTGTTACGCCTGCGATCTATGTGCAAATATAAAATATCGTCGAAAATATCAACTATTCGAGCATCAATTGGAAAAACATAGCTGGGAGCAAGCACAGCATGTTTGCAGTCGTTGTAATGCACGTTTCCTAAGTAAACAAGTGCTGCAGCATCATTATGACTCACAATGTCTTAACTCGCAAAAACGTTTTCTATGCAATCAATGTCCGCAACGGTTTCGCTGGCGACACAATCGTACATCACATTACAAGGAACATCACAGAACTAAACCAACTGGCCTATTATGCGAACACTGTGATCGTAGCTATGATGACAAGAAATCACTTACAATACACAAACTTAAAGTACATCCGGATTCAACGCTTATGCCATGTCTCTGGTGTAATTATAAATTTTATCGACACGACTATTTCGTTAAACATCTAAAGCGTCATGGTCTTAAGGAGCAGGATTATCCACTAGCCGCAACATTAATCAAAGCTACAACGCAACCAAATGGCAATAAATGCATAACTTGCAAGATTTGTCAGTTGTCATTCGAACGTATAGCAGATTTAAGAGCGCATATACTTATGGAACTTAAATTAAATTTAAGTGCACATCAGAATTATGATTCATCAGCTAATTATTCGATAACAAATGCAGCCGGCTTTGAGTTACATTTAGATGATTCGGAAACAGACAATGACGAGTCGTCAACAAATGCCAGTACAATGCACAACAGCATACCATACAAATGTGAGATTTGTCAAGTGCAATGTCGTCGACGTTATGAAATTTTTCAACATCAACGTGCAATGCATTCCCGTGATCCAATGCCGCATAAATGCGATAAATGTATTTTTAAATGTGTTACTAAGCGCCTACTAGAGCATCATCAACAAACTCAATGCCAAAATCCCTACAAGCAATTAAGCTGTGAGCATTGTAATTATAAATTTATGTGGCCCGAAAACTTGGAACAACATCGTCAATTGCAACACACAAAATTTGATACAACAAAAATTATACTTGCGCCAAGCATTCCGTCTGGTGAAGACACAACGAAATCAGCACAGTCCGATACCAAAACAGCAACATTACACTGTCCACATTGCGATCGTACTTATATGCTACAATCACGACTAAACAATCATATACGGGATGTGCACAGTGAAGGTGGTGAGGCAAATAAAAAGAAAAAAGAATCTGAACGTAAATTTCTTTGTTCACATTGTGGTAAAGAGACACAATCGGCTGCTGCTTTAGTTACGCACATGCGTCGCCACACTGGCGAAAAACCCTTCAATTGTGATATGTGCGAGATGGCATTTACACGACGCTGTGAAATGTTGCAGCATCGCATGAAGCACACTGGCGAAAAACCATATCATTGTACAGTTTGTGGCAAAGATTTTGGTAGCTCATACAAACTGAAGCGACATACGTTAATACACAGTGGACTAAAACCGTATAAATGTCAATTCTGTGAGAAAAGTTATCGACAGTCAAAGGATCTTAAGCTGCATTTGCAACAGCATTCCGGCGAAACACCCGCAATCGCTGCAGAATGTGCTACAGGTGGCGATAGTTTCTTACAGCGTGTAGCTTTGGAAAAGCAACGTATTATGCGTACTCAATATGAAGATATGCAGTAA
- Protein Sequence
- MFLCRTCDTITAVELYELKSADNAKYPGKQLLDLLTELIEINKNMTYESQLPQHICNNCKEKLNNAYDFVIQAREANKRLLDGLKPDVKLNTNKCCLQELPLEQFVDVKLEPGAGEETNPMEFGTTNFMEEEEDEQKSDLEHEDIEMQHFESESSAAEHDEQHDDPLTIMKDSSRKRKTKANKKAKQLFKCNQCSKTFRLRHNLNAHKLANHAKVKEAHECPECKRKFNREETLQQHLKQAHTSMDGGPKSATITERKMAKDIDIHLCKPHGCKVIQCMICMQHFTKISELRTHLRVHPAIDTFAKRTETLQELAELFYPTMKKDITEATLLERINKDLKAKHYINFFSITNQAGYELRLESSDSDSDQDSGGKISKKHCYACDLCANIKYRRKYQLFEHQLEKHSWEQAQHVCSRCNARFLSKQVLQHHYDSQCLNSQKRFLCNQCPQRFRWRHNRTSHYKEHHRTKPTGLLCEHCDRSYDDKKSLTIHKLKVHPDSTLMPCLWCNYKFYRHDYFVKHLKRHGLKEQDYPLAATLIKATTQPNGNKCITCKICQLSFERIADLRAHILMELKLNLSAHQNYDSSANYSITNAAGFELHLDDSETDNDESSTNASTMHNSIPYKCEICQVQCRRRYEIFQHQRAMHSRDPMPHKCDKCIFKCVTKRLLEHHQQTQCQNPYKQLSCEHCNYKFMWPENLEQHRQLQHTKFDTTKIILAPSIPSGEDTTKSAQSDTKTATLHCPHCDRTYMLQSRLNNHIRDVHSEGGEANKKKKESERKFLCSHCGKETQSAAALVTHMRRHTGEKPFNCDMCEMAFTRRCEMLQHRMKHTGEKPYHCTVCGKDFGSSYKLKRHTLIHSGLKPYKCQFCEKSYRQSKDLKLHLQQHSGETPAIAAECATGGDSFLQRVALEKQRIMRTQYEDMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -