Lvar006401.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001211.1:143389-146552[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0003 0.024 15.4 5.5 1 23 159 182 159 182 0.96 2 14 0.12 9.8 7.2 1.0 2 23 223 244 222 244 0.96 3 14 0.03 2.4 9.2 1.0 1 23 326 350 326 350 0.93 4 14 0.046 3.7 8.5 3.7 1 23 387 409 387 409 0.95 5 14 6.2e-05 0.0049 17.6 1.1 2 23 417 439 416 439 0.96 6 14 0.00044 0.035 14.9 1.6 2 23 446 467 445 467 0.96 7 14 0.0067 0.53 11.2 0.2 3 21 495 513 493 514 0.93 8 14 0.0033 0.26 12.2 3.3 1 23 564 587 564 587 0.97 9 14 0.014 1.1 10.2 1.2 2 23 625 647 624 647 0.95 10 14 0.00021 0.016 15.9 0.1 1 23 700 722 700 722 0.95 11 14 0.00036 0.029 15.2 2.3 1 23 728 750 728 750 0.99 12 14 3.1e-06 0.00025 21.7 2.0 1 23 756 778 756 778 0.97 13 14 2.8e-05 0.0022 18.7 3.2 1 23 784 806 784 806 0.98 14 14 0.00062 0.049 14.5 0.2 1 22 812 833 812 836 0.90
Sequence Information
- Coding Sequence
- ATGACTTTATGCCGCACCTGTGAGACATCTTCAGCCGCAGAGCTGTACCTGCTCAAGTCGGCAAACAACGTAAAGTATCCGGGAAAACAACTTCTGGATTTATTGACAGAATTAATTGAGATAAATCAAAATATGGCATACGAATCACAATTACCACAACATATTTGCGGCAATTGTAAGGAGAAACTTAATATTGCCTACGATTTTATGCTGCAGGCACGTGAAGCAAATCAACGACTGCTGGACAGTCTTAAGCCAGATGTTAAATTGAACACAGATGAATGTTGTCTACAAGAATTACCGTTAGAACAATTTGTTGCTGTCAAATTAGAACCCGGCGGCGATGAGTCAACCCCTATAGAATTTGCAGAAACGCTTATGGAGCAGCATGAATCAGATTTGGACGCAGATGAAGATGATGATGAAGTGCAACGTGATTGTGACATGCTTGATGAAGCACTTAGAGAAAAGATGCATCATTGTACACAATGTACACGTAAATTTAGTCGACCGGAAACATTGCAGCAGCATTTAAAAATATATCATACTACGTCGCCTGATGGTGGTGGTACTACAACACAGCAAAAAGGCGCCACACTTTCTGCACGCAAGTTGGCTAAAGAACTTGATTTAAATCTTTGTAAGCCGCATGGTTGCAAGGTGATACAATGCATGATTTGTATGCAACATTATACGAAAATATCTGAACTGCGTAATCACTTAAATGCACATCCTGAAATTGATACATTCTCAAGGCGTACAGAAACGCTACAGGAAATAACCGAATCATTCTATCCAGATATAAAAGAAGAAATTACAGAAGCCGCCCTATTGGAACGCATACACAAAGATTTGAAAGCGAAAAAATTTGTATATTTCTATTCAATCACCAATCAGGCTGGCTATGAATTAAGACTAGAAAGTTCAGACTCGGATAGCGATGAAGATGGAGAAGTTAAACCGAAAAAACATTTTTACGCTTGCGATTTGTGTCCGAATACTAAATTTAATCGCAAATATCAGCTTTTCGAACATCAATTGGAAAAACATAGCTGGGAAGATGCACAACATGTTTGTCGTCGTTGTGATGCACATTTCCTAAGCAAACAAGTGCTGCAGCATCATTACGAGTCACAATGTCGCAATTCACAAAAACGTTTTCTATGCAATCGTTGTCCGTTACGTTTTCGCTGGCGACACAATCTTAAATCTCATTATAGAGATCACAGAACTAAGCCAACATCACTCGTATGTGAGCACTGTGATCGTAGCTATGATGACAAAAAATCACTTACAATACACAAGCTTACCGTACACACAGCGTCAACATTGATGCCCTGTCTCTGGTGTAATCGTAAATTCTATCGTCGTGACTATTTTGTGAAACATCTTAAACGTCACGGACTGAAAGAGCATGATTTGCCGTTAGCTGAAACTCTAATAAAAGCAACAGCACAGCCTAATGGTGCTAAGCGCATATGTTGCAAGATCTGTCAATTACAATTTGAACGTATTGCGGATTTGAGGGCACATATACAAATGGAACTAAAACTCAATCTAAGCGCACATCAAAGCTACGACTCATGGGCCAACTATTCAATTACAAACGAAGAAGGTTTCGAATTACACTTGGATGACTCTGAAACGGACAACGATGAATCGGGTACAACTGCATTGGCTAATATGTTTTATAAATGTGAAATCTGTCAAGTGCAATGTCGTCGACGGTACGAAATGTTTCAACATCAACGTGCAATGCATTGTCGAGATCCTATGCCACATCAATGTGATAAATGTATATTTAAATGTGTTAACAAACGCATACTGGAGCATCATCAGCAAACACAATGTCAAAATCCCTTCAAGCAATTAAACTGTGAGCACTGTAATTACAAATTTATGTGGCCAGAAAATTTAGAACAACATCGTCAAATGCAACATGCCAATGCTGAAACAAAACAAAATCTTGGTACAGGCATGACTGCAGCGTGTGGAGACTCTCCAGAAAAGACAGCACAATCCGATACGAAACCAGCTACAGCTGCACTCTTAAATTTGAAGCTGGGAAAAAAGAAGAAAAAAGAATCGGAACGTAAATTTCTCTGTTCACTGTGTGGCAAAGAGGCGTCATCTGCTGCTGCATTGGTTACGCACATGCGACGACATACTGGTGAAAGACCTTTTAAATGTGACATGTGCGAAATGGGCTTTCCACGGCACAGTGAAATGCTGCAACATCGCAGAAAGCACACTGGTGAAAAGCCATATCATTGTACTGTTTGTGGCAAAGATTTTGCACGTTCTGATAAACTAAAACGTCACACGCTTATACATAGCGGTTTGAAACCATACAAATGCACATATTGTGAGAAAAGCTATCGTCAGACAAAAGATCTTAAATTGCATTTGCAGCAACATACCGGAGAAACACCATTCGAATGCAGCACATGTGGAGAACGTTTTATACAGCGTGTTGCAATGGAAAAGCATCGTATTATGCGTGGTCATTTCGAGGAGATACAGTAG
- Protein Sequence
- MTLCRTCETSSAAELYLLKSANNVKYPGKQLLDLLTELIEINQNMAYESQLPQHICGNCKEKLNIAYDFMLQAREANQRLLDSLKPDVKLNTDECCLQELPLEQFVAVKLEPGGDESTPIEFAETLMEQHESDLDADEDDDEVQRDCDMLDEALREKMHHCTQCTRKFSRPETLQQHLKIYHTTSPDGGGTTTQQKGATLSARKLAKELDLNLCKPHGCKVIQCMICMQHYTKISELRNHLNAHPEIDTFSRRTETLQEITESFYPDIKEEITEAALLERIHKDLKAKKFVYFYSITNQAGYELRLESSDSDSDEDGEVKPKKHFYACDLCPNTKFNRKYQLFEHQLEKHSWEDAQHVCRRCDAHFLSKQVLQHHYESQCRNSQKRFLCNRCPLRFRWRHNLKSHYRDHRTKPTSLVCEHCDRSYDDKKSLTIHKLTVHTASTLMPCLWCNRKFYRRDYFVKHLKRHGLKEHDLPLAETLIKATAQPNGAKRICCKICQLQFERIADLRAHIQMELKLNLSAHQSYDSWANYSITNEEGFELHLDDSETDNDESGTTALANMFYKCEICQVQCRRRYEMFQHQRAMHCRDPMPHQCDKCIFKCVNKRILEHHQQTQCQNPFKQLNCEHCNYKFMWPENLEQHRQMQHANAETKQNLGTGMTAACGDSPEKTAQSDTKPATAALLNLKLGKKKKKESERKFLCSLCGKEASSAAALVTHMRRHTGERPFKCDMCEMGFPRHSEMLQHRRKHTGEKPYHCTVCGKDFARSDKLKRHTLIHSGLKPYKCTYCEKSYRQTKDLKLHLQQHTGETPFECSTCGERFIQRVAMEKHRIMRGHFEEIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -