Lvar006407.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001211.1:179061-182578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00072 0.057 14.2 1.2 1 23 191 213 191 213 0.97 2 13 0.025 2 9.4 1.0 2 21 221 240 220 241 0.93 3 13 0.12 9.2 7.3 1.3 2 23 283 304 282 304 0.94 4 13 0.16 13 6.8 5.5 1 23 394 419 394 419 0.96 5 13 3.2e-07 2.5e-05 24.8 1.4 1 23 443 466 443 466 0.98 6 13 0.00013 0.011 16.5 0.9 2 23 474 495 473 495 0.96 7 13 0.027 2.2 9.3 0.4 3 21 523 541 521 542 0.92 8 13 0.035 2.8 8.9 5.2 1 23 593 616 593 616 0.94 9 13 0.046 3.7 8.6 4.9 1 23 623 645 623 645 0.98 10 13 3e-05 0.0024 18.6 2.2 2 23 697 719 696 719 0.96 11 13 2.2e-05 0.0018 19.0 0.1 1 23 736 758 736 758 0.96 12 13 2.1e-07 1.7e-05 25.4 2.7 1 23 764 786 764 786 0.98 13 13 5e-05 0.004 17.9 2.1 1 23 792 814 792 814 0.97
Sequence Information
- Coding Sequence
- ATGAAAAAAAGCAAACTCTGTCGCACTTGCGCAACGTCTACGGCTACGAAACTTTACGAGCTTAAAATGCTAATGGCAGATACGTATGCAGAAAAGCAGCTACTCGACTTGTTAAAGGAGCTAATTGAAATTAAAATAGATACGTTATACGAAGCGCAATTGCCACAACAACTTTGTGCTAGCTGCACAGAAAAATTAAAGAATGCCTACGACTTTATAAGGCAGGCGCGTGAAACGAATCAGCGATTTGTAGAAGCGCTGCAAGACAATGAACCAAGAAGACTGCTGCAACAGTTGCCAATGAACGTTGTCTACGTGGAACCAGAGCAATTGGATATTAAAGAAGAAATAATTATAGAAGATGTGCAGAATACGCTCTTGGAGCAACAAACAGCAACAATTTCGGAAGAACAAAAACCGGAAGTATATATTGAGTGTAACAATAAGGAGCAGTTATACGATCCATTAATTAGCGAAGATGACATTGATGATGTAGACTACTCCACCTCCGCTTCCGTAGATGATTTACCGCTTATAAAAAGAAAAAATCAAAAAAGAAAACCAATGCCATTTGCTTGCGATCAATGTGGACAACGTTTTCGCAAAGAACGAGCTTTCGCATTACACAAACGTAAACATTTAATCAAGAGTAAATGGCTAAGTTGTTCATATTGTCAACATAAATTTGGACGCCAGGAAACACTTGACTTACATCTTAAATACGATTGTAATAAGATCTTAGCTTCGAATAAGCCATCAAAACGAAACGCCGGCATGTTGTGTGAAAGTAAAAAAGCAAAAACGCTTGATTTAAATTTATGCAGGCCACATGGCTATAAGATTATACAATGTATGATTTGTTTAAAGACTTTTACGAAAATAGCACAATTACGTTGTCATTTAAATGCACATCCGGCAATTAACGCCTTAGCGATGCGTAACACAGAAACATTAAAACAAATTGCCAATAATTATTATTCAGATATCGATACGGAAACAATAACGGAACCGGCATTATTGGAACGTATACGCAGCGATTTAAGCGCCAAACAATATGTGCATTTCTATTCAATAACCAATCAAGCTGGCTATGAGTTAAATTTAGATACTTCTGAGACTGAAACTGATGATCAACATGAAAATGATGATGATGATCGAAAGACCGCTAAGGAATTTTATTATAAATGTGATTTATGTACGACGCAGTATAAATTTCGTCGTAGACATAAACTTTTTGAGCATCAACGGGAAACACATTTATGGCATGAGGCACCACATATTTGTCCGCGTTGTGATGCGCGTTTTCTAAGTAAAAGATTAAAATCATTCCAATGCACACAATGTGATCGCAGTTTTAATGATAAGAAATGGCTAACAATGCACATACGTACAGAACACACAGATGCTTCCACTTTAATTCCATGTCAATGGTGTCAACGTGTATTCTACAGACGTGACTATTATCTAAAACATCTTAAACGGCATGGTTTAGAGGAGCATGATTTACCACAGGCTAAAATGTTAATTAAAGCAACACAAGAGTCCAATGGGGCTAAACGCATCTGCTGTAAGATTTGTCAACTAGATTTTAAACGTATAACGGATTTGAGGGGACATATACTAATGGAACTAAAATTAAATTTAAGTACGCATCAAAACTTGGCTAATTACTCAATAACAAATGAAAACGGTTTTGAGCTACACTTGGAGGATTCGGAAACGGGTGATGATGATGAAGATGATCATAATGACGTGCATGGGTACACGGGTACTCCGTATAAATGTGAGATTTGTCAAGTGCAATGTCGCCGGCGCTATGAAATGTTTAAACATCAACATGCCATGCATACTCTGGAATCATTGCCGTATGCATGTGACAAATGCATTTACAAATGTGTCTCGAAGCGACTACTCGAGCATCATCAGCGCACTCATTGCAATGAAGCCAAACAATGGACATGCGAACATTGTTGCTATAAATTTATGTGGCAAGAAAACATGAAGCTACATTTACAATTGCAACACAATGACATAAAGCAAGAAACTAAAGAAGAAGAAGAAGCGACGGCTACTGCAACAGATGTCTTGAATTGCCCACATTGTGAACGCACCTATGTACATCAATCGCGACTGAATAATCATATTCGTGTTGTACACAGCAATGAAGCTGGCTATAGAGAGAAACAAGAAAAAGAAAAGAGAAAATATTTATGCTCAATTTGTGGCAAAGGATTTCGTTCACCCGGAGAAATGTTGGAACATACACGTGTTCATACGGGGGAAAAACCTTTCAAATGTGATTTATGTGATAAATCATTTACGAGACGCAATAACTTGCAACTTCATCTTAGATATCATACGGGTGAAAAACCGCATCATTGTACAGTTTGTGGCAAAGGATTTGTTCGTGCGAGTAAAGTAAAAGAACATATGGTAACGCATAGAAAAATAAAATCACAGTATTAA
- Protein Sequence
- MKKSKLCRTCATSTATKLYELKMLMADTYAEKQLLDLLKELIEIKIDTLYEAQLPQQLCASCTEKLKNAYDFIRQARETNQRFVEALQDNEPRRLLQQLPMNVVYVEPEQLDIKEEIIIEDVQNTLLEQQTATISEEQKPEVYIECNNKEQLYDPLISEDDIDDVDYSTSASVDDLPLIKRKNQKRKPMPFACDQCGQRFRKERAFALHKRKHLIKSKWLSCSYCQHKFGRQETLDLHLKYDCNKILASNKPSKRNAGMLCESKKAKTLDLNLCRPHGYKIIQCMICLKTFTKIAQLRCHLNAHPAINALAMRNTETLKQIANNYYSDIDTETITEPALLERIRSDLSAKQYVHFYSITNQAGYELNLDTSETETDDQHENDDDDRKTAKEFYYKCDLCTTQYKFRRRHKLFEHQRETHLWHEAPHICPRCDARFLSKRLKSFQCTQCDRSFNDKKWLTMHIRTEHTDASTLIPCQWCQRVFYRRDYYLKHLKRHGLEEHDLPQAKMLIKATQESNGAKRICCKICQLDFKRITDLRGHILMELKLNLSTHQNLANYSITNENGFELHLEDSETGDDDEDDHNDVHGYTGTPYKCEICQVQCRRRYEMFKHQHAMHTLESLPYACDKCIYKCVSKRLLEHHQRTHCNEAKQWTCEHCCYKFMWQENMKLHLQLQHNDIKQETKEEEEATATATDVLNCPHCERTYVHQSRLNNHIRVVHSNEAGYREKQEKEKRKYLCSICGKGFRSPGEMLEHTRVHTGEKPFKCDLCDKSFTRRNNLQLHLRYHTGEKPHHCTVCGKGFVRASKVKEHMVTHRKIKSQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00892136;
- 90% Identity
- -
- 80% Identity
- -