Basic Information

Insect: Leucophenga varia
Gene Symbol: Clamp
Assembly: GCA_018903435.1
Location: JAEIFJ010001527.1:127130-129360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.3e-06 0.00074 20.2 0.3 1 23 134 156 134 156 0.99

2 7 1e-05 0.00081 20.1 1.1 1 23 364 386 364 386 0.98

3 7 4.6e-06 0.00037 21.1 0.1 1 23 392 414 392 414 0.99

4 7 3.1e-06 0.00024 21.7 3.2 1 23 420 442 420 442 0.99

5 7 1.8e-06 0.00014 22.4 0.4 1 23 448 470 448 470 0.98

6 7 1.5e-06 0.00012 22.7 0.4 1 23 476 498 476 498 0.98

7 7 8.7e-05 0.0069 17.1 0.2 1 23 504 526 504 526 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.3e-06	0.00074	20.2	0.3	1	23	134	156	134	156	0.99
2	7	1e-05	0.00081	20.1	1.1	1	23	364	386	364	386	0.98
3	7	4.6e-06	0.00037	21.1	0.1	1	23	392	414	392	414	0.99
4	7	3.1e-06	0.00024	21.7	3.2	1	23	420	442	420	442	0.99
5	7	1.8e-06	0.00014	22.4	0.4	1	23	448	470	448	470	0.98
6	7	1.5e-06	0.00012	22.7	0.4	1	23	476	498	476	498	0.98
7	7	8.7e-05	0.0069	17.1	0.2	1	23	504	526	504	526	0.96

Sequence Information

Coding Sequence: ATGGAAGATCTAACAAAGAATATCATCTTTACTACCAACGCTCTTGGGGCAAACGGCCAGCCGGCCACAATACAATATCAGACAACGGACGGCACTATACTGAAACAGCCAAAAATTGAAGGGCAAAAGGCAGATCAGCCTACATTCTACTATACAACAAACGGCAACGCAGCAACTGTCAATCTGGCGCAATTAACAACCGAAGACAACAAGACCTGCTACATTGCACAGCCAGTCGGCGGTTACAATTATGCGCTTGTCAATGGCGTACAGATAAATCAAGGTGCACCAATTGGCATAGCCACTGTCGATGCACAAGGACGCATACAGATTGTAAATCAAAATAAACCAATAGCTTCGAACAATTCGAATATACAGAACACCATTTCAAATATCAGTTTTAAATGTGATGTTTGTGGTGCTATGTTTCCACATTTGGCATTACTCAATGCACACAAACGTATGCATACACAGGATGGTGGCGATCAATCGCAACAACAAAATAGCCAACAATCTGATACAATTGCTGTTGTCAATACACAGCAGGGTTTGATGCAAACACAAAATATTATAAACGAAAATGGACAAATGAGTCAAATACAAATAGTCGCTTCCGATGGCAGCATTGAGCCAGTGCAAATACATCAAGCAAGTACGGATGCCAACAGCAGTGCTGGTGGCAATAAAATACACAGCAAATGCACCACTTGTGGTGCTGCAATAATGCAACACTCAAAGCGTAAGGGACCCAAGCAGACACGTTGTGAATCTTGCATGCAGGCTGAACATAATGCTGCATTATTTGCATCTAGCGATGGCCAAATTCCGAGTCAAATGCAAATCATATCGACAACACCACAGGCACAGGCGCAGCTACAACAGATTGTAGCACAGCAAACTGGAACAATTAAACGTGAAAATTGTAGTACTTCACCGGGACATCATCCAGTGAAGAAACGCAATACACAACAGCAATTGACTAAATGTCAGAAATGTAATGGTTCCGGTGTAGTTGCTGTGGGTCACTCACATGCTGGCACAAGCCATAAACATACAACATCGCCGGTAAAATCAGAAAATCCAAAACCTTTCACTTGTACTATTTGCGGCGGTACATTCTCACGTTACTCCAGTTTGTGGTCACACAAAAAATTACATAGCGGTGAAAAGAATTATAAGTGTACCATTTGTGGTTTAGCATTCGCTAAGGCAGTCTATTTGAAGAATCATGCACGCATACACACTGGCGAAAAACCATATAAATGCCAAACATGCGGCATGCAATTCTCACAGTCGCCACATTTAAAGAATCACGAACGTACGCATAGCGGCGAACGTCCATACGTTTGCGAAGTTTGTGACAAAGGATTTGCGCGTCATGCGACACTATGGAACCACCGACGTATACATACTGGCGAAAAGCCATATAAATGTGACATTTGTGGCTCAGCCTTTTCACAGGCGGCACATCTTAAGAATCATGCCAAGGTGCATTCCGGCGAAAAACCATTCAAATGTGATATTTGCTCTGCCGCTTTTGCCGATCGTTTTGCACTAAAACGTCATCGTGGTATACATCAAAAATATGGACAAACAGCGCCACGACAGCCACATGCTGATAGTGTTGTTATACATAAACGTGAAATGCCCGATATGGATGATGATGCGCAACATGAAGTTATAATTTCCGGTTTATAG
Protein Sequence: MEDLTKNIIFTTNALGANGQPATIQYQTTDGTILKQPKIEGQKADQPTFYYTTNGNAATVNLAQLTTEDNKTCYIAQPVGGYNYALVNGVQINQGAPIGIATVDAQGRIQIVNQNKPIASNNSNIQNTISNISFKCDVCGAMFPHLALLNAHKRMHTQDGGDQSQQQNSQQSDTIAVVNTQQGLMQTQNIINENGQMSQIQIVASDGSIEPVQIHQASTDANSSAGGNKIHSKCTTCGAAIMQHSKRKGPKQTRCESCMQAEHNAALFASSDGQIPSQMQIISTTPQAQAQLQQIVAQQTGTIKRENCSTSPGHHPVKKRNTQQQLTKCQKCNGSGVVAVGHSHAGTSHKHTTSPVKSENPKPFTCTICGGTFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHQKYGQTAPRQPHADSVVIHKREMPDMDDDAQHEVIISGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00891212;
90% Identity: iTF_00891212;
80% Identity: -