Basic Information

Insect: Leucophenga varia
Gene Symbol: -
Assembly: GCA_018903435.1
Location: JAEIFJ010000323.1:950910-953846[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00081 0.064 14.1 4.7 1 23 263 286 263 286 0.98

2 12 1.2e-05 0.00093 19.9 3.6 1 23 299 322 299 322 0.97

3 12 1.4e-05 0.0011 19.7 0.3 1 23 328 350 328 350 0.98

4 12 7.8e-05 0.0062 17.3 3.6 1 23 356 378 356 378 0.98

5 12 0.0076 0.6 11.0 0.2 2 23 384 405 383 405 0.95

6 12 0.0004 0.032 15.1 5.5 1 23 422 445 422 445 0.98

7 12 4.3e-05 0.0034 18.1 0.6 3 23 460 481 459 481 0.96

8 12 3.7e-06 0.00029 21.4 0.5 1 23 487 509 487 509 0.98

9 12 0.00017 0.014 16.2 5.1 1 23 515 537 515 537 0.97

10 12 0.00098 0.078 13.8 0.8 1 23 542 564 542 564 0.96

11 12 3.8e-06 0.0003 21.4 2.9 1 23 570 592 570 592 0.97

12 12 0.029 2.3 9.2 3.8 1 23 598 621 598 621 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00081	0.064	14.1	4.7	1	23	263	286	263	286	0.98
2	12	1.2e-05	0.00093	19.9	3.6	1	23	299	322	299	322	0.97
3	12	1.4e-05	0.0011	19.7	0.3	1	23	328	350	328	350	0.98
4	12	7.8e-05	0.0062	17.3	3.6	1	23	356	378	356	378	0.98
5	12	0.0076	0.6	11.0	0.2	2	23	384	405	383	405	0.95
6	12	0.0004	0.032	15.1	5.5	1	23	422	445	422	445	0.98
7	12	4.3e-05	0.0034	18.1	0.6	3	23	460	481	459	481	0.96
8	12	3.7e-06	0.00029	21.4	0.5	1	23	487	509	487	509	0.98
9	12	0.00017	0.014	16.2	5.1	1	23	515	537	515	537	0.97
10	12	0.00098	0.078	13.8	0.8	1	23	542	564	542	564	0.96
11	12	3.8e-06	0.0003	21.4	2.9	1	23	570	592	570	592	0.97
12	12	0.029	2.3	9.2	3.8	1	23	598	621	598	621	0.96

Sequence Information

Coding Sequence: ATGCGACACAACATTGATGTAAGAAACCAGGATACAATGGCACATAATCGAAACTGGAGACTTTGGTGCCGCTTGTGCGCTGAGGAAAACATGAATAATAGTAGCAATCTTTTTCTCAAACATGAGCAGCCTACCAGCACACATGCAAACGTTAGCAGTAACGATGAAACGCCGGGAACGGTAGCTATTGAAATCATAAAATTCTTTCTGGTTAATTTGACTTCCGATGATGAACTGCCGCAATGCATTTGCAATAAGTGCAACACATTAATAGAGTCTTTGGTCGATTTTTCCGCGAAAGTTTCCAAAGTCCAAAAAATGTTTGGCATATTGCAAAACTCCTCGTTTGATGCGGAAAACATTGACATTAATGAAGTCCGTTTTAAATGTGGCATTACAAACATTGACAATACGAAAAGTACAACAACAACATTATCAGAAGTAATATTAGTTGAAGAAAAACCAAAGATTCGCAGTGAATCGGAACCGGAATGTAACTTGTTTGAGGACAATCCATTATCGTCAAAAATAAATGCACAGATCAAGAGTGAAGAAGAATCAGAGTATGAAAATATGGAATTTGAACAAAAAATGAGCGTAGAGGATGACGATGACCACGACGAGGACGACGACGAAGCGTATAAGCCAAACGATCCAATTCAAGCAGATGTTGACGTTGATGATGATGCTAGTGATACGTCTGCATCGACTAAATCGTTGACATTAAAAATAAGAAATTTTGTGCGCAAATCTCGAAAACTTAAATTAAAGAAAAAATCTGTATTTTATGAATGTACCATATGTCCTAGTCGATTTCGACACACCAATCATTATGAATCGCACATGAAACGCGTGCATCAACAAGAAGTGCAACTGGAAGAAGAGAAGAAAATTTTTCAATGTAAATTTTGCAGTAAGAAGTTCAAAACTAAAAATCAATTGGAATCACATATTAACAATATGCATAGGAGTGAACGTCCATTTGTTTGCGAAGAATGCGGTTATACGGCACGTACAAATGGAACATTGAAATATCATATGCTGACACATTCCGATTATGCGCCGTTCACTTGTGATTTATGTAATAAATCGTATAAGACCGAATATCTAATGAAACGTCATCGGAAAAATCATGATCTTAAAGAGCTTGTTTGTGGCGCATGTGGTCTTCAATTGAATTCTCGAACATCGCTCAATCGTCATCTACTTACACACTCTACGAATAAGGATACTGCTGAAGTGCAAAAGAAAAAGGACACAATTTATACCTGCGAAATATGCAATAGTCAGTTTCGGCACAGCAATCATTTCGAATCACATATGAAGCGTATACATCAGCAGGATGTGCAGATTGATGAGGATAAAAAGATTGCACCATGTACATTTTGTGAAAAGAAATTTAAAAATAAATGGCTACTTGAATCACATATAAATAGTGTGCACAAAACAGAACGTCCGTTTGTATGCGAAGAATGTGGTTTCACGGCTCGAACAAGTTCAACGTTAAAGCAACATATGCTAACGCATACCGATTATGCGCCATTTGAATGTGAAGTATGCAAGAAATGCTTTAAGGCCGAATATCATCTGCGACGTCATAAGGAAATACATGATCCAAACAAACACATATGCTCGGAATGTGGTCTACAATTGAATTCTCGTACAACGCTTAATCGTCATTTATTGATACATTCGGATAAAATGGACCATAAATGCGATTACTGTGGACGTGAATTTAAGCGAGCCAAGACTTTGAAGAATCATCTATTATTACACACAGGTCTTAAGCCTTATGCATGTGATTTTTGTGATCGAACTTTTGCCAATGGTTCCAATTGTCGAACACATAAAAAGAAATCTCATCCAGTTGAGTTGGCTGCTCAGGAAGCGTCTGGAGAGAAGTCATGTACGCAAAACATTCCGAAATTAGCAGCATTAAAAGCAATTACAAAAAATAAAGATAACTTAACACCGGTTGTCTCAAAACAAAGTGGAAATTTTGCGTTTGGAAAGAAACCAAAACCAATGGAGAAAAAAATTGAACACAAATTTAGAAGATCAAAGCCAAACTTCTACTGCATGTAG
Protein Sequence: MRHNIDVRNQDTMAHNRNWRLWCRLCAEENMNNSSNLFLKHEQPTSTHANVSSNDETPGTVAIEIIKFFLVNLTSDDELPQCICNKCNTLIESLVDFSAKVSKVQKMFGILQNSSFDAENIDINEVRFKCGITNIDNTKSTTTTLSEVILVEEKPKIRSESEPECNLFEDNPLSSKINAQIKSEEESEYENMEFEQKMSVEDDDDHDEDDDEAYKPNDPIQADVDVDDDASDTSASTKSLTLKIRNFVRKSRKLKLKKKSVFYECTICPSRFRHTNHYESHMKRVHQQEVQLEEEKKIFQCKFCSKKFKTKNQLESHINNMHRSERPFVCEECGYTARTNGTLKYHMLTHSDYAPFTCDLCNKSYKTEYLMKRHRKNHDLKELVCGACGLQLNSRTSLNRHLLTHSTNKDTAEVQKKKDTIYTCEICNSQFRHSNHFESHMKRIHQQDVQIDEDKKIAPCTFCEKKFKNKWLLESHINSVHKTERPFVCEECGFTARTSSTLKQHMLTHTDYAPFECEVCKKCFKAEYHLRRHKEIHDPNKHICSECGLQLNSRTTLNRHLLIHSDKMDHKCDYCGREFKRAKTLKNHLLLHTGLKPYACDFCDRTFANGSNCRTHKKKSHPVELAAQEASGEKSCTQNIPKLAALKAITKNKDNLTPVVSKQSGNFAFGKKPKPMEKKIEHKFRRSKPNFYCM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -