Lvar005125.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- zfh1
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010001414.1:5387131-5391755[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.4e-05 0.0027 18.4 0.8 1 23 129 151 129 151 0.97 2 15 0.00066 0.053 14.3 1.2 3 23 159 179 157 179 0.94 3 15 0.00027 0.021 15.6 0.1 1 23 327 349 327 349 0.97 4 15 0.013 1 10.3 1.8 1 23 355 377 355 378 0.96 5 15 4.1e-06 0.00032 21.3 2.8 1 23 408 430 408 430 0.98 6 15 0.0095 0.75 10.7 0.3 1 23 457 479 457 479 0.94 7 15 0.03 2.4 9.1 0.2 1 23 485 508 485 508 0.97 8 15 0.4 32 5.6 0.6 5 19 519 533 516 534 0.91 9 15 0.00018 0.014 16.1 5.6 1 23 543 565 543 565 0.97 10 15 0.052 4.1 8.4 0.5 2 23 571 592 570 592 0.96 11 15 1.3e-05 0.0011 19.7 0.3 1 23 601 623 601 623 0.98 12 15 0.0053 0.42 11.5 0.2 3 23 631 651 629 651 0.97 13 15 6.3e-05 0.005 17.6 0.5 1 23 657 679 657 680 0.95 14 15 0.077 6.1 7.8 0.1 1 23 690 712 690 712 0.96 15 15 0.00063 0.05 14.4 0.4 1 23 1268 1290 1268 1290 0.97
Sequence Information
- Coding Sequence
- ATGAATCAAAATCAAAGCTATGATCAAATGGCTGCCGAAAATCTTATGTTTATGGCACGTGATGGCCAAATGGTTAGTGAATTTATAGCAACGCACGACAATAGCGATACTGTTGTTGTGGCAGCATGTGATGGCTCTGCTATAGAACTTGAACAAGCGGCTGCATTAGTACAAACAGCTTTAGTAGTAGCGCCAGATGTATTCGATGCCGATGTCTTTGATGAAGATGCGCCGCAAATGGTCACCGAAGAGGTCATTACGGATGACTGGGTACAGCATCAAGGTGAAGAACGCGTTGAAATACCTGCGGCACAAATTGACATCAGTAATAGTTCGCAAGTCTTACTCGACATGGTACAGGATGAGTATACAGCACTACGTCCATATCCATGTGATTTTTGCAGTCGTCGTTTTCGTAAGAAAGCTAGTTTAAACAATCATATGATTGCGCATCAGAATGATCGTCCACATCTCTGCAAGCTTTGCGGTGCACGTTTTTCACGGCGCGCTGAACTCATCAATCACTTTAAAGCGCATGCAGAACAACAATTTGCCGATGAAACTTTAAATTTGATACGCAAAAAGCGACAACTTGACGATCATTATTACGAGCAAGAATGGTCAGAGTCAACAACGACAGCGACAACGCTAACATCGCCACAGCAGCAAATGAATGCAGAGCTGCAGTTAGAAGAACAAGCTACGCAAGAAGTTTTGCAACTGGAGCATACCAATAGTGCCAATATTACCTCAGCAACAACTACGTCTGCAACAGCAACAACAACGCGTGGACGCATTAGCCGCCTGAAGCCGAAGGAAGAAACACAGTATGTAGTTGTGGAGCAGAAGTTGCCCGCAGTAGAAATGGATTACATTGAATGTGATGAGCTGCAGGCATCGACAGCAGCAGTGAAACTAACGCAGGATCAGCCAATTGAACCACAACCGAATTTTCCTGTCATTGACTATGCAAAACCGTTTGTGTGCCAACAGTGTGGTTTGTCATTTGCACGTGAAAAGGCGTTGGTTTCACATGCTAAGAATCATCGTGTTGACTCACCCTTTGAATGCAATCAATGTAATGAGTTGTTTTGGGATAACAACAGTTTGCAGGAGCATCAAAAATCGCATCATTTCGAAGAGAGCAATTCCGAATATGATCCTGATGAGGCAGGTGACTCGCAAAGTGAATCTGAAACGGAACAACAGCTTTATGGAGAGTTCTATTGCAGCGAATGCGGCATTTCATTTCATCGTCAGGATTTATTGCGTCGTCATTTGAAATCGCATGCTAAAAAAGCTGCTGCAAAAGATATAAGCAATACTGGTACGGCTGCTGTAACCGCAGTTAATATCAAAGATGCACAACATTGCTGCAATACGTGTGGCGAAACATTTGCTGAAGCACTTGATTTATTGGCGCACGCTGAAATACATGCACGGTTTCCACCGTTTAAATGTGTACTTTGCGGCGAGGCTTTCTACGAGGATCAAGCTATAAAGCGTCATCTCGAGACACGACATGCTCAGGAAATCACTGTAAATTCTTGTATACTCTGCGGTAAAGAGTGTCGCGATCGTAAAGCTTTAATGAAACACTCATGGGATCATTCGCGTGAAAAATGTCATTCGTGTTCCAAATGTGGCAAAAACTTTCACAATAAGGCACGTCTGAAGCGGCACATGGCATCACATCGTGACAAATCGGTTATGTGTGACGTTTGCCAAGAAGAGTTTCCTGATGGACGTTCGCTCTCCAATCATCGACACTCGCACAGTGCTACCTCGTCGGGCAAGCTTTTTCCTTGTACCGAATGTGGTAAAACATTTGGGTCACGCAGTTCACAACAGATTCATGTGCGCATACACACCGGTGAACGTCCGTACGGCTGTCGCTTCTGTTGGAAAGCATTCGCCGATGGTGGCACGCTGCGCAAACATGAGCGTATACATACTGGCGAAAAACCGTATGCCTGTTCCGTATGTCCACGTGCATTTAATCAACGTGTTGTACTGCGCGAACATATACGTTCACATCACTCCGGCAAGGATGTGAATCGTGGTACATATTTTTGTACCGTTTGTAGTGCAGATTTGACGTCGTCCAATGAACTAATACAGCATCTTATACAGCACAGTGATATGAACACTGCCAAGCAACGACAGCCGGTGACTGGGCCCAGAAAGTACAAACGTAGGCGAAAGTTACAGCCTCATGAAATTGCACATTTACGCGCTGAATTCAAAACTGAGAATTTAGGTTCTGATATTGATTTATCAGATTTTGATATGGAAAATGTCGATGATTTGCTAGGCATAACAGAAGCAGCGACGACGACCACAACAACAACAACGACGACAACAACAAAATCAAAGGGCAAGAGTAAGAGTGCCGCGTCAAAACGTGCCGCCAACAATAGTAAATCTAGCGTTGCTTCTATAAAATCCGAGGCATTACATGATGATGATGAGGAACAGGAGAACGTTACAACAAGCAATAACAACAACAATGATAAAAAGACGCGTTATGACTCCAACAACAGCCAATCCGATAAATTATGGGATGAAAAATTTCTACAGAATTCAACAAATAATCAAGAAGATGCATATAAAACACTCTTTAGCAATGTTGAGCAAGGATTGAAGGAGAAAGTTGGTGGTGCACAGCGTACACAAGAGATACAACTAAACAGTGAAAAGTCTCAAGAAACAACAACAGGAACCGGTACAAGTTCGTCTCTTACAACAAATACTGCCTTCGGTACTAGATCTCGAAAAAAAACAACAAAAACACAACAAAAGTCGTCCAGTGCGCGGCCACGAATGATACACACGGAAAAATCACGCGTCACATCTAATCATGAAACGGGCAATGCGCATAGAAAAACACGCGCACGAACCTATGTGACACGCACCGAGACGACAAAAATTGATTTGCTGCAATCAAAATCAAGTTCAGCATCAACAATAGTCGATGACTATGAAATAATATCACCCGCTACACAACCGCCAAATCAGATTAGTTCAAGTCCACTACACATAAAGCAGGAGCACGAACAAAATCATCATCATCAACAGCACCAGCAGCAGCACCAAAATCACAATCAAATGCAAAATATATACGATGCGCATTTATTGCTTGATGCTTCCAGTTTACGAAAAAGTGGCTACGATAAATTTAATCCAAGCATAGTTAATGATTTTGAGGAGATTTTTCGCTCACCATTAAAATCGGAGCGTAGTACACGTCAACGTTTTACAAGTGAATCGTCGACAACACCACAATTTCTACCAGATGATGAACAGCATTTAATAAAGATCGAACCAACTTCGCCCGATTTACGTGAAATTGTCGAAAGTCAACGTAATACTTCCTCCACATCGCATTCTGGTACATCCGCGCGCACTACGCAACTGAGACAGATTACTAGCAATGGCAAATATCTGCTCGATACAGCGTCCAATGTGAATGCTGCAACAACGAAGCGTAGTAAACATTCGGTTACAAAACAGCGTAATATCAACGGTTTAAGTACGCACAACGGTCGTACTAGTGCAGCCGGCGGCGGAAGTATATCAAACAATACAGCTAATACGCAGCAATCAAACTCCGCTTCATCATCATCCTCATATCTCAATTACGGCGTAGATACATATGCATCTAATGTTGCTGGTACATCTAGCAGCTCAGATGTTAATTCAACATATTTTTCTATTTCGGAAGTTGTGTCAGCAGCGAATGCTACAGAGGCTGCAGCCGCTGCTGCTGCCTCCGCTAAGCCTGAACGTAAAGTGCGTCAATTCGAATGCGAAATGTGCTCGGCCGTATTTTCGGATCGTACACAGCTACTCGAACATGTACATATACATATTTAG
- Protein Sequence
- MNQNQSYDQMAAENLMFMARDGQMVSEFIATHDNSDTVVVAACDGSAIELEQAAALVQTALVVAPDVFDADVFDEDAPQMVTEEVITDDWVQHQGEERVEIPAAQIDISNSSQVLLDMVQDEYTALRPYPCDFCSRRFRKKASLNNHMIAHQNDRPHLCKLCGARFSRRAELINHFKAHAEQQFADETLNLIRKKRQLDDHYYEQEWSESTTTATTLTSPQQQMNAELQLEEQATQEVLQLEHTNSANITSATTTSATATTTRGRISRLKPKEETQYVVVEQKLPAVEMDYIECDELQASTAAVKLTQDQPIEPQPNFPVIDYAKPFVCQQCGLSFAREKALVSHAKNHRVDSPFECNQCNELFWDNNSLQEHQKSHHFEESNSEYDPDEAGDSQSESETEQQLYGEFYCSECGISFHRQDLLRRHLKSHAKKAAAKDISNTGTAAVTAVNIKDAQHCCNTCGETFAEALDLLAHAEIHARFPPFKCVLCGEAFYEDQAIKRHLETRHAQEITVNSCILCGKECRDRKALMKHSWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVMCDVCQEEFPDGRSLSNHRHSHSATSSGKLFPCTECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGKDVNRGTYFCTVCSADLTSSNELIQHLIQHSDMNTAKQRQPVTGPRKYKRRRKLQPHEIAHLRAEFKTENLGSDIDLSDFDMENVDDLLGITEAATTTTTTTTTTTTKSKGKSKSAASKRAANNSKSSVASIKSEALHDDDEEQENVTTSNNNNNDKKTRYDSNNSQSDKLWDEKFLQNSTNNQEDAYKTLFSNVEQGLKEKVGGAQRTQEIQLNSEKSQETTTGTGTSSSLTTNTAFGTRSRKKTTKTQQKSSSARPRMIHTEKSRVTSNHETGNAHRKTRARTYVTRTETTKIDLLQSKSSSASTIVDDYEIISPATQPPNQISSSPLHIKQEHEQNHHHQQHQQQHQNHNQMQNIYDAHLLLDASSLRKSGYDKFNPSIVNDFEEIFRSPLKSERSTRQRFTSESSTTPQFLPDDEQHLIKIEPTSPDLREIVESQRNTSSTSHSGTSARTTQLRQITSNGKYLLDTASNVNAATTKRSKHSVTKQRNINGLSTHNGRTSAAGGGSISNNTANTQQSNSASSSSSYLNYGVDTYASNVAGTSSSSDVNSTYFSISEVVSAANATEAAAAAAASAKPERKVRQFECEMCSAVFSDRTQLLEHVHIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -