Lvar020595.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010000323.1:937362-939924[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.0086 16.8 3.3 1 23 250 273 250 273 0.98 2 12 1e-05 0.00082 20.0 1.1 2 23 287 309 286 309 0.95 3 12 0.00039 0.031 15.1 0.5 1 23 315 337 315 337 0.95 4 12 1.5e-06 0.00012 22.6 4.9 1 23 343 365 343 365 0.98 5 12 0.00022 0.017 15.9 0.1 1 23 370 392 370 392 0.96 6 12 0.0025 0.2 12.5 3.8 1 23 408 431 408 431 0.98 7 12 0.001 0.08 13.8 0.4 3 23 446 467 445 467 0.95 8 12 2e-05 0.0016 19.1 0.1 1 23 473 495 473 495 0.98 9 12 3.9e-05 0.0031 18.2 1.3 1 23 501 523 501 523 0.97 10 12 0.0012 0.097 13.5 0.5 1 23 528 550 528 550 0.96 11 12 9.7e-07 7.7e-05 23.3 2.3 1 23 556 578 556 578 0.98 12 12 0.027 2.2 9.3 4.7 1 23 584 607 584 607 0.97
Sequence Information
- Coding Sequence
- ATGAGACCCAAACAAGACTTAAAGGAGAAGGAATCTATGCTTCAAAATAAAGACTGGAAACTTTGGTGTCGTCTGTGTGCTAAAGTGGATATGCAAAATTGTATCAATGTATTTTTCAAGAACGAGCAATGCTACAGCGACTTTGAGAATTCACAGTCACGGAACAGTGACGGCGGCGTTAATTCACTTGCTACAGAAATCAGTAGATTCTTTTGGGTCAATATGACATCCGATGATGAACTACCACAAAGTATTTGCAATGAGTGCAATACTCTTATAGAAACGAATATAAACTTTGCTGAACGTGTGGCTCGAGTCAAAAAAATGTTTGATGTATTGCAAAACTCTTTTGATATTGTAACAACTACAGATCTAAATGAAGTGCGCCTTAAATATGGTCTAACAAATGTTGAGGATGTGGCAATTCCAACAATGGCTGAGGTTATACTAGTCGAAGAAAAACCTACGATACATAGCGAGTCAATACAAAATGAACAGGACATAACGGTCGATGTAAATCCTTTAGCTACTAAATCACCGTCTGGTCACATTAAAAGTGAAGAAGAAACCGATGATGATGTTGATGGTGATGAACAGAATTTGGAATGTGAGCCTGTTATAAATGCTGAGGGCGAAGATCTAAAATTAAACGATCCGATTGAAACAGATAATGATGAAGATTTCACAGCTGCAACATTACCATTAACTATTAAACTATCTGAGCACGCAAAGAAAACCGTTGCAATGTATGAATGCAACGAATGCAAAATAAAATTTAAATACGGCAGTCATTTTGAATCGCATATGAAACGCATACACGAAAAGGATATACAAGTTGAAGTGGAAAAAAAGATAGTACCATGTACATATTGTGAAAAGAAATTTAAAACGAAATTTCTACTTAAATCACATATCAATAATATACATAAAACCGAGCGTCCATTTGTTTGCATTGAATGCGGCTATGCGACAAGTTCGCGTTCAACATTAAAAAATCATAGACTAACACATTCCGATTATGCGCCGTATGAATGTGATATATGTAAAAAATGTTTTAAGACAAAATACAATTTGCAATTGCATAAAGAAACGCACGATATGCACAAACACATTTGTCCAGAATGTGGCTTGGAACTGAATTCTCGCGCTACACTCAATCGTCATTTATTGATACATTCCAAGCGTAAACAAAATGGTCTTAAGGATAAATCGAAAGCACGTTTCGAATGTAATATATGTCAGAGTAAATTCCAAAATACAAATCATTTCGAACAACACATGAAACGCGTACACAAACAAAATGTACAAATTGACGAAGAAAACAAAATTGCACCATGTCCATTTTGCGATATGAAATTCAAAACTAAATGGTTTTTAGATTCACACATTAATAATATACACAAAACCGAGCGAATATATATTTGTGAAGAGTGTGGCGTCACAACAAGAACAAGTGGTGCACTGTCATCGCATATGCTAACGCACACCGACTATGCACCATTCGAGTGTGATGTCTGCAAGAAATCCTTCAAAACTGAATATCGTCTGCGTGTTCATAAGGAAATACATGATCCTAATAAACACATATGCTCTGAATGTGGTCTACAGTTAAATTCTCGTGTTACGCTCAATCGTCATCTACTTATACATTCGGATAAAATGGATCATAAATGCGATTATTGTGGACGTGCATTTAAGCGAGCAAAGACTTTAAAAACTCATCTACTAGTACATACAGGCCTAAAACCATACTCTTGTGATTTTTGCGATCGTACTTTTGCCAATGGTTCTAATTGTCGAACACATAAAAAGAAATCTCATCCAGTTGAGTTAGCTGCTCAGGAAGCGTCTGGAGAGAAAACATGTACTCAAAACATACCCAACTTGGCCGCATTGAAAGCGATCACAAAGAATAAAGATAACCTAACACCGGTTGTCTCGAAACAAAGTGGAAACTTTTCGTTTGGAAAAAAACCAAAACCAATGGAAAAACATTTTGACGCAAATTTAGATGAAGATAAAAGCCAGGAGGCTAGTTTGGAGCAAAAATTATCGCCACAATTATTTTTTACATAA
- Protein Sequence
- MRPKQDLKEKESMLQNKDWKLWCRLCAKVDMQNCINVFFKNEQCYSDFENSQSRNSDGGVNSLATEISRFFWVNMTSDDELPQSICNECNTLIETNINFAERVARVKKMFDVLQNSFDIVTTTDLNEVRLKYGLTNVEDVAIPTMAEVILVEEKPTIHSESIQNEQDITVDVNPLATKSPSGHIKSEEETDDDVDGDEQNLECEPVINAEGEDLKLNDPIETDNDEDFTAATLPLTIKLSEHAKKTVAMYECNECKIKFKYGSHFESHMKRIHEKDIQVEVEKKIVPCTYCEKKFKTKFLLKSHINNIHKTERPFVCIECGYATSSRSTLKNHRLTHSDYAPYECDICKKCFKTKYNLQLHKETHDMHKHICPECGLELNSRATLNRHLLIHSKRKQNGLKDKSKARFECNICQSKFQNTNHFEQHMKRVHKQNVQIDEENKIAPCPFCDMKFKTKWFLDSHINNIHKTERIYICEECGVTTRTSGALSSHMLTHTDYAPFECDVCKKSFKTEYRLRVHKEIHDPNKHICSECGLQLNSRVTLNRHLLIHSDKMDHKCDYCGRAFKRAKTLKTHLLVHTGLKPYSCDFCDRTFANGSNCRTHKKKSHPVELAAQEASGEKTCTQNIPNLAALKAITKNKDNLTPVVSKQSGNFSFGKKPKPMEKHFDANLDEDKSQEASLEQKLSPQLFFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -