Basic Information

Insect: Leucophenga varia
Gene Symbol: -
Assembly: GCA_018903435.1
Location: JAEIFJ010001870.1:1542127-1545749[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.3e-06 0.00011 22.8 0.8 1 23 243 265 243 265 0.97

2 16 8.7e-05 0.0069 17.1 4.2 1 23 272 295 272 295 0.95

3 16 0.005 0.4 11.6 0.3 2 23 330 351 329 351 0.96

4 16 0.0033 0.26 12.1 1.4 1 23 440 463 440 463 0.96

5 16 0.013 1.1 10.2 0.3 1 22 470 491 470 491 0.96

6 16 0.0085 0.68 10.9 2.1 1 23 500 522 500 522 0.97

7 16 5.4e-06 0.00043 20.9 0.5 2 23 530 552 529 552 0.96

8 16 0.00029 0.023 15.5 4.5 2 23 560 581 559 581 0.97

9 16 0.0078 0.62 11.0 0.1 3 21 609 627 607 628 0.93

10 16 0.24 19 6.3 5.9 1 23 675 698 675 698 0.96

11 16 0.0024 0.19 12.6 0.3 2 23 736 758 735 758 0.95

12 16 0.00028 0.022 15.5 0.7 2 23 786 808 785 808 0.95

13 16 0.0062 0.49 11.3 0.1 1 23 822 844 822 844 0.95

14 16 0.0017 0.14 13.0 0.1 1 23 850 872 850 872 0.98

15 16 6.8e-07 5.4e-05 23.7 0.6 1 23 878 900 878 900 0.98

16 16 0.00021 0.016 15.9 5.2 1 23 906 928 906 928 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.3e-06	0.00011	22.8	0.8	1	23	243	265	243	265	0.97
2	16	8.7e-05	0.0069	17.1	4.2	1	23	272	295	272	295	0.95
3	16	0.005	0.4	11.6	0.3	2	23	330	351	329	351	0.96
4	16	0.0033	0.26	12.1	1.4	1	23	440	463	440	463	0.96
5	16	0.013	1.1	10.2	0.3	1	22	470	491	470	491	0.96
6	16	0.0085	0.68	10.9	2.1	1	23	500	522	500	522	0.97
7	16	5.4e-06	0.00043	20.9	0.5	2	23	530	552	529	552	0.96
8	16	0.00029	0.023	15.5	4.5	2	23	560	581	559	581	0.97
9	16	0.0078	0.62	11.0	0.1	3	21	609	627	607	628	0.93
10	16	0.24	19	6.3	5.9	1	23	675	698	675	698	0.96
11	16	0.0024	0.19	12.6	0.3	2	23	736	758	735	758	0.95
12	16	0.00028	0.022	15.5	0.7	2	23	786	808	785	808	0.95
13	16	0.0062	0.49	11.3	0.1	1	23	822	844	822	844	0.95
14	16	0.0017	0.14	13.0	0.1	1	23	850	872	850	872	0.98
15	16	6.8e-07	5.4e-05	23.7	0.6	1	23	878	900	878	900	0.98
16	16	0.00021	0.016	15.9	5.2	1	23	906	928	906	928	0.98

Sequence Information

Coding Sequence: ATGCAGGAAAATAGAATTTGCAGGACTTACAAAAATATAGGCAAAACATTATCGGAGTTCCTTACCGAGTTGACCAGGATTGATCTCAAAGTGGAGCATGGCAGTAAGCTACCCCATTGTTTATGCGGCACATGTACGCGTAAATTAAAAAATGCATACGAATTTATGCAACAAGCACAAGAGGCAAATGAGAAGCTACTGGAGTGGCTTAAGACTGATGAATCAACGATGCAGCATGAACACGAACTTAAAGAGACCAAAAGTGAAGAGGAACCATTTGATGAGCTTTTCGATGAACGTTCAGATTTTTGTATAGATCAGTCAAATTTAACAAGCGAGCAGGTTGAGCAGCAGCAAACTATGATCGAAAATTCAAGCGATATGATTTCGGACATTAAAATGGAGGCTAGCGATTTTGTCAGTACCGAGCTGGCAAATACAAATTCTACAGCTGACATAGCCAAGTTAACTACTGTTCAAGAGAAAGATAACAATGAGGCGGAACCAGTTTATACGGATCCGTTAGTTATGTTTGATACGGACACCGCTAAAGATTTTGATGACAGTATAGAAACCGAAGGCAGTGCAGATCCTTTAGTTGATGAGGCTGTTAAAAACAAATGCATTGATATGAATATGGACAATGATGAGGACGAAGAGGATGACGTGCCACTTGTAAAATTAAAATACGCTTACAAAAATGACATAACTCTGGGTCTGAGAACATACGAATGCCCGCATTGTGGTAGAGTTTATAATCGTCCACGTTCACTGAGCAAACATTTGTTGCTACATCGAGATAAAAGCGAATGGCACGCATGCACACATTGTGAAAAACGTTTCTATCGCAAAGATCTTCTTATGGTGCACATGGCAAAAAAACATGGAGATGATTTAAGACGCAAACGAACGGCAGCTCTCTGTGATAGTAAAATTCAAAAGGATATTGATTTAAATCGCTGTAAGCCGAATGGTTGTAAAATTATACAATGTATGATCTGTCTCCGAAAATATTCATCTTTTGCTGAATTACGTGCACATTTGCAGCAACATACGTCGGAGATTATTTCATTTAATGAACGCCAAGAAACACTTGAAGAAATTTTAGATTCCTTTTATCCAGATCTTAAGAATATAACAGAGAAACAATTGATCGCACTGATACGCAAAGATTTGGAAAACCAAAGATATTCGACTTTCTATTCAATAACAAATGAAGCCGGTTATGAACTTAATCTGGATAGTTCAGAGACAGATAGTGATAATGATAATTTGGATACTGATGTTAAGAGTCTTAAGGCGGAAGCACAGAGGATATACGAGTGCGAACCTTGTAATATTCAATTTCGACGTAAATATAAACTCTATGAACATCAGCGTGAACGTCATAATTGGTCAGAAGCACCCTATGAATGTAAACGTTGTAAAGCACGTTTTGTTGGATTGCGTCAATTGGAACAGCACGAAAGAACGCAATGCAGAAGCATTAAAAAACGTTTTATCTGCAAAAAATGTCCAATGCGTTTCAGTTGGAGACATAATATGAAAGCACATGCACGGCTACATGATGACAATTCCAGAGCAGTCAGTTGCAGTGAATGTAATCGTCCTTTTGAAGATAAACGTTCACTGACAATACATATGAGAATGTTTCATGTCGACAAATCAAAACTATTACCATGTCATTGGTGTAGTCGCGTATTTTATAACCGCAGCTGTCTTGTCAAACATTTAAAGCGTCATGGTTTGGAAGAACGTGATGTACCTTTAGCTGAGGCTTTAGTAGCAGCAACAACCAAACCGAATGGAGTGAAGCGGATAAACTGTAAAATTTGTCATCTACAATTTGAACAAATTGCCGATTTACGCGTACACATAATGATGGAGCAAAAACTAGGTCTAAGCTCACATCAAAGCTATGATTCGTTGGCCAATTATTCAATTACAAATGCTGCTGGTTTTGAATTGCATATTGAAGATTCGGAGACAGAAGATGAACCAAATGATGCCAATAGTGGACCGTACAGTTGTGAACTTTGTCAGGTTAAATGTCAACGTAAATATAAATTGCTGCATCATCAACAACAGTTGCATACATTCGGAAAGTTGCCTTATGAGTGCAACAAATGTATCTTTAAGAGCGTTTCTAAGGAAGTTTTTGAGCATCACAAACGTACACAATGCTTTAATACAGAAAAACAATTGTCTTGTACAATATGTGGCTATAAGTTTATGTGGCAGGATAATTTAGATTTGCATATGCGTCTACAGCATGCAAGCACAGATGAACCAAATGCAAATACTGATATCGCGCCAAAGCCTAGAAAGAAAAAACAATCGAATACAACTCCACTACAGTGTCCGCACTGTGAACGTACATACATGCAGAAGGCAAGACTCAATATACACATTAGGGATGTACATATCGATGGCAATAGAAAAAAGAAAGAAGCTGCACACCGTTATCTCTGTGCGTTATGTGGTCTGGAAGCACAAACCAATTCCAAGTTAATTATACATATGCGTAGGCATACGGGAGAAAAGCCATTTCCATGCGATTTGTGTGATATGGCTTTTACTGCACGCAATGAGATGGTCAACCATCGTAGAATACACACTGGTGAACGTCCATTTCGCTGTTCGATATGTGGTAAAGATTTTCCACGCTCCGAAAAACTAAAACTACATATGCTATCACATAGTGGTCTACGGCCACATAAGTGTCCATACTGCGAAATGGATTTTAGATATAAACACGATTTAAAGGGTCATTTGCGAAAGCATGGAGATCAAGCCCACACACTGCCAAATAAATAA
Protein Sequence: MQENRICRTYKNIGKTLSEFLTELTRIDLKVEHGSKLPHCLCGTCTRKLKNAYEFMQQAQEANEKLLEWLKTDESTMQHEHELKETKSEEEPFDELFDERSDFCIDQSNLTSEQVEQQQTMIENSSDMISDIKMEASDFVSTELANTNSTADIAKLTTVQEKDNNEAEPVYTDPLVMFDTDTAKDFDDSIETEGSADPLVDEAVKNKCIDMNMDNDEDEEDDVPLVKLKYAYKNDITLGLRTYECPHCGRVYNRPRSLSKHLLLHRDKSEWHACTHCEKRFYRKDLLMVHMAKKHGDDLRRKRTAALCDSKIQKDIDLNRCKPNGCKIIQCMICLRKYSSFAELRAHLQQHTSEIISFNERQETLEEILDSFYPDLKNITEKQLIALIRKDLENQRYSTFYSITNEAGYELNLDSSETDSDNDNLDTDVKSLKAEAQRIYECEPCNIQFRRKYKLYEHQRERHNWSEAPYECKRCKARFVGLRQLEQHERTQCRSIKKRFICKKCPMRFSWRHNMKAHARLHDDNSRAVSCSECNRPFEDKRSLTIHMRMFHVDKSKLLPCHWCSRVFYNRSCLVKHLKRHGLEERDVPLAEALVAATTKPNGVKRINCKICHLQFEQIADLRVHIMMEQKLGLSSHQSYDSLANYSITNAAGFELHIEDSETEDEPNDANSGPYSCELCQVKCQRKYKLLHHQQQLHTFGKLPYECNKCIFKSVSKEVFEHHKRTQCFNTEKQLSCTICGYKFMWQDNLDLHMRLQHASTDEPNANTDIAPKPRKKKQSNTTPLQCPHCERTYMQKARLNIHIRDVHIDGNRKKKEAAHRYLCALCGLEAQTNSKLIIHMRRHTGEKPFPCDLCDMAFTARNEMVNHRRIHTGERPFRCSICGKDFPRSEKLKLHMLSHSGLRPHKCPYCEMDFRYKHDLKGHLRKHGDQAHTLPNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -