Lvar000929.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophenga varia
Gene Symbol
-
Assembly
GCA_018903435.1
Location
JAEIFJ010001141.1:457399-461127[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.024 1.9 9.5 0.7 1 23 112 135 112 135 0.95
2 14 0.00065 0.052 14.4 1.2 1 23 140 163 140 164 0.94
3 14 1.2e-06 9.4e-05 23.0 3.1 2 23 174 196 173 196 0.96
4 14 0.088 7 7.7 4.7 2 23 325 347 325 347 0.95
5 14 5.6e-05 0.0044 17.7 6.9 1 23 356 379 356 379 0.98
6 14 0.026 2.1 9.3 9.9 2 23 553 574 553 574 0.97
7 14 6.5e-07 5.1e-05 23.8 3.3 1 23 580 603 580 603 0.96
8 14 1.5e-05 0.0012 19.5 0.3 1 23 608 631 608 631 0.96
9 14 2.3e-05 0.0018 18.9 3.8 1 23 648 670 648 670 0.96
10 14 0.00014 0.011 16.5 1.6 1 23 675 697 675 697 0.98
11 14 5.4e-06 0.00043 20.9 0.4 1 23 703 725 703 725 0.96
12 14 5.2e-06 0.00042 21.0 0.6 1 23 731 753 731 753 0.98
13 14 1.3e-06 0.00011 22.8 1.7 3 23 761 781 760 781 0.99
14 14 3.8e-08 3.1e-06 27.7 1.0 1 23 787 809 787 809 0.99

Sequence Information

Coding Sequence
ATGTCGCAATTGAAACTTGATGCGGAACGTATCTGTCGCGTTTGTTTGCGCGAACAGAATGAACTTTTTCTTATCTACGATGAAGCTCCCGTGGAACAAGGCTTAAATATTGTACAAATATTAAATGAATGTACACGTTATACAGTGGAACGTTTTGATAAAATGCCACACCAGATGTGTGCCGGTTGCATTGGTGATGCACGTGCTGCATATCGCTTTAAACGTACCGCTGACGAAGCTTACCGTACTCTGGTCTCAATGCTTGGGCGTATACCGCGAAAGAACAAGGAAAATCATGTCGATAATGGAACGCAGACGGAGCAAAGCTCGCTGCATCCGTGTGAAATGTGCAATGAAAAACTTTTTAGCGCAACAGAATTGCGACAACATCGCAGCATTGAGCATAATGAACGCGATTTTAAGTGTAGAGTATGCGGCAAGGTGTTTGAACAACTGCGTGTACTACAATTGCACCTGACACAGGAACATCACGAACAGGTGACAACGGCAGCAACTTTAAAATGCAAAGAATGTCAACGTATATTCTCACGACGTGATCATTTGGTGCGACATATGCGAAATTTGCACGGACAGCAGCAGACTACAGCAGCAACAACAAATTCCGGTGGAAATCGAGAAAAGTTTTTGAAACAAGAGAAAACTGAGCAAAATGTGCAATACATTCAATCGGAAAATATAGAAAATGTTGCACTGTTAGAGCAAACTGAAATGATTAGTTTTGAACCGTATTGGGCACATAAATTCGAAAATCTCGATGCTGAGGAAGAGGTCATGGATAACAATTTGCAAACAAATCCAATATCCAGCGATGAAGATACAACCCACGAAGGAGGCAATGATACTAAACAGAAATTATGGCTAACTTTAGAGCCGGAAGTGTATTTGGACACGCAGCAGCCAAATGAAGAAAGTCAAACAGAAGAGCTACCGATGCCTGCAAGCAGTGATCGAACTTGTAGGGTTTGTAACGAGCATTTCCATACCTACAAGGAACTCTGTGCACATCTTATTGTTATGCATCAGCATGCTGGTTTGATGTTCAAGTTTCGTTGCCACCTATGCCAACGACAGTTTAGACGTGATACTCATTTGCAGCGACATTTGCGAACAGTCCATAAATCGCTGAATGCAGAGGGACAAAGTACAAAATCGTCGCGAAAAACTAAGAAATTAAAAAAAAATGTGTCCGATGATGAAACCAGTGAAGACGATAATAATATGGTTGAATATGCTGGTAGTGAATATGATACAGAGAGTAGAGGTGGTGCTGATGATATTGATGAGCATGAAAATGATATAGTGGAAAGGGCAAATGATACGGATAGAAGTAGTAACAATACAATGCATATTAAAGTTGAACCCACGTTAGTTGAAAATACAACAAATCTAGAGTTAGATTCAACATATATCACACTTAAGCATGAAATGCCAGAGGATGGTTATGATGCAGACACATCTGCAACAGTTGCTGGAGTATCTTTCTTGGATACAACAACAACAACACAGGGTGACGTTACGACAACACAAAATGAAACATCGGAGAAACGTAGCAAAGTTAAGGTTGAAATAGTCCGTGAATATCTGCAAAAGAAACGTACGTCGCGCAAACATAATAACGATGACAATCCAGAGAATCGTTGTGATCAATGTCAGCGAACATTTTCTCGTCATTGCCATTTATTAAGGCATAAGCTTTCACATTTGGAACAAAAGCCTCACGAGTGTCCACATTGTCCAAAAACCTTTGCACGTAGTGATCACCTAAAGGCGCATGTTCAAAGTTTACATGGTAATAAAGACTTTAAATGTACACTTTGCGATGCAGCATTCTCGCGCGCAGACGCATTGGAACGACACAAGTTGAGTAAACACGATGGCGCCGGTCTTGATGGTAGCGTTGCGGGCGCAGAATCAAAGGTGCATCCCTGCGAATTCTGCGAAAAGAAATTTACAAGCAAAAGCTATTTACGTAAGCATACACTCATACACACCGATCTACTGTATGCATGCAAGAACTGCGATGAAACCTTCAAAGAACGCCAAAAGCTGCGTGAACATGAGAAAACTCACGCATCGGAACGTAACTTTTTGTGTTCTATATGCGGTGATAGTTTTGCGCGTAACGATTATTTGCGCGTGCACATGCGCAGGCATCTTGGTGAAAAACCATACAAATGTAAATACTGTGGCAAAGGTTTTCCACGTGCCACTGACGTTAAGGTTCATGAAAGGTATCATACTGGAACGAAACCGAATCTTTGTACGCTATGCGGCAAGGGATTTCATCGTGCATACAATCTGACTATACACATGCGTACACATACGGGCGAGCGTCCATACCGCTGTGATCAGTGTCCGAAAAGCTTTACACAAAGCAATGATCTTAAAGCGCATATACGCCGCCATACGGGGGAGCGTTACAAGTCTACATCAGTGCATACGCAACATTCACAAGACTCACAATATGCAACATCATCAATAACGACAAATGTTGGCATACAATCGCCTGTTGCAACACCACAGCCACAAGCACAGCCAACGCCAACCTCTGTCCCAACATCTATATTGGCGAATAACTATCTTACGTCGTCGTATATACAATTACCGGATACTATTGTTCGCTTTCAACAATCCATTGGACAACCGTCAATCCAGCCGCGTACTTCAACAAAGTAG
Protein Sequence
MSQLKLDAERICRVCLREQNELFLIYDEAPVEQGLNIVQILNECTRYTVERFDKMPHQMCAGCIGDARAAYRFKRTADEAYRTLVSMLGRIPRKNKENHVDNGTQTEQSSLHPCEMCNEKLFSATELRQHRSIEHNERDFKCRVCGKVFEQLRVLQLHLTQEHHEQVTTAATLKCKECQRIFSRRDHLVRHMRNLHGQQQTTAATTNSGGNREKFLKQEKTEQNVQYIQSENIENVALLEQTEMISFEPYWAHKFENLDAEEEVMDNNLQTNPISSDEDTTHEGGNDTKQKLWLTLEPEVYLDTQQPNEESQTEELPMPASSDRTCRVCNEHFHTYKELCAHLIVMHQHAGLMFKFRCHLCQRQFRRDTHLQRHLRTVHKSLNAEGQSTKSSRKTKKLKKNVSDDETSEDDNNMVEYAGSEYDTESRGGADDIDEHENDIVERANDTDRSSNNTMHIKVEPTLVENTTNLELDSTYITLKHEMPEDGYDADTSATVAGVSFLDTTTTTQGDVTTTQNETSEKRSKVKVEIVREYLQKKRTSRKHNNDDNPENRCDQCQRTFSRHCHLLRHKLSHLEQKPHECPHCPKTFARSDHLKAHVQSLHGNKDFKCTLCDAAFSRADALERHKLSKHDGAGLDGSVAGAESKVHPCEFCEKKFTSKSYLRKHTLIHTDLLYACKNCDETFKERQKLREHEKTHASERNFLCSICGDSFARNDYLRVHMRRHLGEKPYKCKYCGKGFPRATDVKVHERYHTGTKPNLCTLCGKGFHRAYNLTIHMRTHTGERPYRCDQCPKSFTQSNDLKAHIRRHTGERYKSTSVHTQHSQDSQYATSSITTNVGIQSPVATPQPQAQPTPTSVPTSILANNYLTSSYIQLPDTIVRFQQSIGQPSIQPRTSTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-