Basic Information

Insect: Leucophenga varia
Gene Symbol: -
Assembly: GCA_018903435.1
Location: JAEIFJ010001870.1:1536621-1540201[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.00011 0.0086 16.8 0.8 1 23 23 46 23 46 0.95

2 25 0.03 2.4 9.1 0.9 1 22 53 74 53 74 0.96

3 25 2.5 2e+02 3.1 0.5 1 21 83 103 83 104 0.94

4 25 0.038 3 8.8 1.4 1 23 141 163 141 163 0.95

5 25 0.15 12 6.9 4.7 1 23 245 268 245 268 0.96

6 25 0.065 5.1 8.1 0.9 1 21 280 300 280 301 0.93

7 25 0.024 1.9 9.5 0.3 2 23 311 333 310 333 0.96

8 25 8.2e-05 0.0065 17.2 0.2 2 23 349 370 348 370 0.97

9 25 2.5e-07 2e-05 25.1 0.9 1 23 377 399 377 399 0.98

10 25 1 82 4.3 3.6 2 23 428 449 427 449 0.96

11 25 0.0094 0.75 10.7 0.8 1 23 549 572 549 572 0.95

12 25 0.0092 0.73 10.8 3.6 1 23 579 603 579 603 0.92

13 25 0.0094 0.75 10.7 1.1 1 23 609 631 609 631 0.97

14 25 1.3e-05 0.001 19.8 1.1 1 23 645 667 645 667 0.98

15 25 0.0043 0.34 11.8 4.1 1 23 674 696 674 696 0.97

16 25 0.0089 0.71 10.8 0.1 2 21 723 742 722 743 0.94

17 25 0.0011 0.084 13.7 4.5 1 23 787 810 787 810 0.96

18 25 2.4 1.9e+02 3.2 0.6 2 22 818 838 817 838 0.94

19 25 0.038 3 8.8 0.9 1 23 847 870 847 870 0.94

20 25 0.00066 0.053 14.3 6.4 1 23 894 917 894 917 0.98

21 25 4.6e-06 0.00037 21.1 0.2 2 23 950 971 949 971 0.95

22 25 0.011 0.9 10.5 3.6 1 23 977 999 977 999 0.98

23 25 6.5e-07 5.2e-05 23.8 3.2 1 23 1005 1027 1005 1027 0.99

24 25 5.2e-07 4.1e-05 24.1 2.4 1 23 1033 1055 1033 1055 0.99

25 25 0.00072 0.057 14.2 0.1 1 22 1061 1082 1061 1085 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.00011	0.0086	16.8	0.8	1	23	23	46	23	46	0.95
2	25	0.03	2.4	9.1	0.9	1	22	53	74	53	74	0.96
3	25	2.5	2e+02	3.1	0.5	1	21	83	103	83	104	0.94
4	25	0.038	3	8.8	1.4	1	23	141	163	141	163	0.95
5	25	0.15	12	6.9	4.7	1	23	245	268	245	268	0.96
6	25	0.065	5.1	8.1	0.9	1	21	280	300	280	301	0.93
7	25	0.024	1.9	9.5	0.3	2	23	311	333	310	333	0.96
8	25	8.2e-05	0.0065	17.2	0.2	2	23	349	370	348	370	0.97
9	25	2.5e-07	2e-05	25.1	0.9	1	23	377	399	377	399	0.98
10	25	1	82	4.3	3.6	2	23	428	449	427	449	0.96
11	25	0.0094	0.75	10.7	0.8	1	23	549	572	549	572	0.95
12	25	0.0092	0.73	10.8	3.6	1	23	579	603	579	603	0.92
13	25	0.0094	0.75	10.7	1.1	1	23	609	631	609	631	0.97
14	25	1.3e-05	0.001	19.8	1.1	1	23	645	667	645	667	0.98
15	25	0.0043	0.34	11.8	4.1	1	23	674	696	674	696	0.97
16	25	0.0089	0.71	10.8	0.1	2	21	723	742	722	743	0.94
17	25	0.0011	0.084	13.7	4.5	1	23	787	810	787	810	0.96
18	25	2.4	1.9e+02	3.2	0.6	2	22	818	838	817	838	0.94
19	25	0.038	3	8.8	0.9	1	23	847	870	847	870	0.94
20	25	0.00066	0.053	14.3	6.4	1	23	894	917	894	917	0.98
21	25	4.6e-06	0.00037	21.1	0.2	2	23	950	971	949	971	0.95
22	25	0.011	0.9	10.5	3.6	1	23	977	999	977	999	0.98
23	25	6.5e-07	5.2e-05	23.8	3.2	1	23	1005	1027	1005	1027	0.99
24	25	5.2e-07	4.1e-05	24.1	2.4	1	23	1033	1055	1033	1055	0.99
25	25	0.00072	0.057	14.2	0.1	1	22	1061	1082	1061	1085	0.91

Sequence Information

Coding Sequence: ATGAGCGTTGACGATACTGACGAGGATGAAAAGAGTGTTATAGCTAAAACCGAAACAGTTGTAAAATACGTTTGCGAATTATGTGGCTATAACTTTAGCCGAAAGCGGCAAATGTTTGCACATGTTCAGGAAAAACATAAGCAGGATGCGTTACCATATCGTTGTAATGTTTGTAAGTTGTTCTTTGTATCGGAACAATTGTTTGATCAACATACACGTACGCAATGCCGAAATCGTGATAAGAAATACAAATGTCGTCGTTGTCCAGGAAAATTTATGTGGGCTGAAAATCTCGAACAGCATCAGTGTGCCGATAAGATGAAAAAACGTGCTGCTAAAAATGATGCAAAACAATGCAAGACATCTAAATTGGAAATTGAGAGTGAGCTGGAAACGGAACAATTGGCTAAAAGCAGTCGTTATCTTTGCTGTTTATGTACAGCACGATTTGAAAACTTACAATCATTACGTTTGCATTTAATGATTCACGAAGATGGACGCACTGAAGTAGACATGCTAAATGGTATATACTTTAAACGTTTTTATCCAGCTGGCTGTATAGGTCAAGAGGCCGAATTAACACTACAAATTGCTGCTGATTTTGCAACGCAAGATTTTGCGCGTTTTTATTCAGCATTAGATGAGAATGGACAAGAATTGGATTTATATGATTCTGAATCTGCTACGGATGATGATGAGGCTGAAGATGCTGGTATACCACCAAAAACTATGTATACTTGTTGTATTTGTAATGCTAAAAGTCAACGTCGCAAGCATTTACTGCAACATCAAAACGAAGAGCATACAACACAGCAAGACCAAGCAGATTGTATGGGTTTTGAGTGCGATAAGTGCAATAAACGTTATATTTGTGCAGAACTTTTGGAACAGCATCAATTACGTGATTGTTTAAATCGACACAAAACCATACAATGTGAAAAATGCGAAGAGCGTTTCGTATGGCAGGAAAATTATAAGATGCATTTGAATATAAGACATACAGCACAAGGAGGAAAAACTAAAAGTAAATTGGTCAAAAAATTGCAATGTGATCTTTGTGATAAGGTATTCATTTGGCCAAAAGACTTAACGCGTCATAGACGTATACATTTACCCGATACGGAGAAGTACGAGTGTCCTTATTGTGATCGTAAATTTGTACGTAAGGATAATATGCAATCACATCTTAAAGTGCACGGAGAAGAGGCAAAGCGTAGCAAACCAATGCGTGTGAAAGGTGTTGATCAGCAACTATGTAAGCCACATGGTTGTAAACGTATTGAATGCATGATTTGTCATACAAATCATAGAAAAATTTCCGATTTGAGAACGCATCTTAATACACATCAGTATACAGTTCGTTTCAGTGTTAGCGGTAGCACTGGTGGTGGCGGCGGAGGCTTTGATGACGTTGAAGATATTGATGCTATTTCGAAAGCACTTTATCCCGACGAAGATCAAAATTTAGATGAAAAGAATTTAACTAAACGTATTATGTTGGATATTTCCAATCGTGAATATGATAGATTCTACTCCATTACAAATGAAGCTGGCTTCGAGTTACATTTAGACAGCAGTGAGACTGAAACCGATTCTGAAACTGAAATGGATCAAAGTGCAACAACAACAAACAAAAATGCTAAATATTTTTGTGAATTATGTTCCAATGGATTTCCGCGTAAATTTCAGCTTTATGCACATCAGCAGGCGAAGCATCAATGGGAGGAGGCTGCCTATGCATGTTCAATTTGTCATGCACGTTTTATAAGCGCAACGCTTTTGGAACATCATTCGCGTACTTTGTGTCACAATGTACAGAAGCGTTACATATGTCGTAAATGTCCCCAGCGTTTCCGTTGGAAGGAGAATTTTAAGGCACATGGTAGTACTCACGCAAGTGAAGTTGGTGACGGCAAGCAACAGCCAACTACATTTGAGTGTCTAGAATGCAATCGTTCGTTCCAAATGCAAAAGGACCTTACGCGGCATATGTTAATGCATTCACGTGATTCTGCGATTTTTGCTTGTCATTGGTGTCCACGTAAATTTTATCGACATCAGAATATGGTGCAACATTTAGAACGGCATGGTATTGCTCCACATGAACTTACCTACGCCGAAATGCTTATAAACGTGCATAAATTTGCCAATGGCAAGAAAATAATACAATGTAAAATATGTAATATAGATTTTGAACGTATTACGGAATTACGTACACATTTACTTAACGCTCCTGAGACACATCACAGCTATGATTCTATGCTAAACTATTCGATTACAAATCAATTAGGCTATGAATTGCATTTGGAAGATTCGGAAACAGACGTTGAGACAAAACCAGAGAATGTGCCTCTTACATATACATGTGAATTGTGTCAACTTGTGTGTCGGCGTAAACATGAATTGTTTCGGCATCAGCAGGCAATGCATAAACTGGAGAAGATTATACTAAAATGTACGCATTGCGTTTTCAAAAGTGTTTCAAAGGATATATTAGCCTATCACATGCGCACACAGTGCGAAAACAAAGAAAAACAATTTGTCTGTGAAAAATGTAATCTAAAATTTATGTGGTCACATAATCTAGCGCAACATATTGAGTTACAACATAATGAAAATGCTGCAGAAGCGCCGGCTGCTGTATTGTTGGAAACACTGACACCAGATGCTAAACAAATCTTTCAATGTCCACATTGTAAATGTAAATATAATCGCAAAGATCGTTTGACGGCACACATCAAGAAAATGCATGGTGTCGCAGGCACAGATAGCGCCAGTCCATCGCGCAAAACTGCGGCGCAAGCTAACGCTGAGGATAAACTTAAAAAGGCAGATCAAAAGCGTTTTCTTTGTGCGTTTTGTGGTAAAGCGGTTAGTTCCTCATCGAATCTCATTATACATATGCGGCGTCATACTGGTGAAAAACCATTTAAATGTGATTTCTGTGAAATGGCTTTTGCGCGCTCCTCAGACATGCAGTGCCATCGTCGTAAACATACGGGCGAACGTCCCTATCAGTGCACGGTATGTGAAAAGGCATTCTCACGTTCGTATAAACTGCATCAACATATGCGCATACATAATGGTGAACGCCCTTATAAATGCACCTACTGTGAAAAGAGTTTTACTCAGTCAAATGATCTAACATTACATGTTCGACGGCATACAGGTGAACGTCCGTACGTATGTGGCATTTGCGGTGAGCGTTTTATTCAAGGCACGGCGCTAAAGAATCATCGTCTTATGCGTGGTCATTTTGAGGAGATCGACGAACCACCAGTACGTCGCACTATATTGGAACAGTTTCCGGCTAGCTAA
Protein Sequence: MSVDDTDEDEKSVIAKTETVVKYVCELCGYNFSRKRQMFAHVQEKHKQDALPYRCNVCKLFFVSEQLFDQHTRTQCRNRDKKYKCRRCPGKFMWAENLEQHQCADKMKKRAAKNDAKQCKTSKLEIESELETEQLAKSSRYLCCLCTARFENLQSLRLHLMIHEDGRTEVDMLNGIYFKRFYPAGCIGQEAELTLQIAADFATQDFARFYSALDENGQELDLYDSESATDDDEAEDAGIPPKTMYTCCICNAKSQRRKHLLQHQNEEHTTQQDQADCMGFECDKCNKRYICAELLEQHQLRDCLNRHKTIQCEKCEERFVWQENYKMHLNIRHTAQGGKTKSKLVKKLQCDLCDKVFIWPKDLTRHRRIHLPDTEKYECPYCDRKFVRKDNMQSHLKVHGEEAKRSKPMRVKGVDQQLCKPHGCKRIECMICHTNHRKISDLRTHLNTHQYTVRFSVSGSTGGGGGGFDDVEDIDAISKALYPDEDQNLDEKNLTKRIMLDISNREYDRFYSITNEAGFELHLDSSETETDSETEMDQSATTTNKNAKYFCELCSNGFPRKFQLYAHQQAKHQWEEAAYACSICHARFISATLLEHHSRTLCHNVQKRYICRKCPQRFRWKENFKAHGSTHASEVGDGKQQPTTFECLECNRSFQMQKDLTRHMLMHSRDSAIFACHWCPRKFYRHQNMVQHLERHGIAPHELTYAEMLINVHKFANGKKIIQCKICNIDFERITELRTHLLNAPETHHSYDSMLNYSITNQLGYELHLEDSETDVETKPENVPLTYTCELCQLVCRRKHELFRHQQAMHKLEKIILKCTHCVFKSVSKDILAYHMRTQCENKEKQFVCEKCNLKFMWSHNLAQHIELQHNENAAEAPAAVLLETLTPDAKQIFQCPHCKCKYNRKDRLTAHIKKMHGVAGTDSASPSRKTAAQANAEDKLKKADQKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDFCEMAFARSSDMQCHRRKHTGERPYQCTVCEKAFSRSYKLHQHMRIHNGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYVCGICGERFIQGTALKNHRLMRGHFEEIDEPPVRRTILEQFPAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -