Lvar001835.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- bab1
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010000783.1:281804-284148[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-10 2.2e-06 27.6 0.0 2 42 384 424 383 427 0.87 2 2 0.92 2.6e+03 -1.5 0.0 27 34 512 519 502 523 0.78
Sequence Information
- Coding Sequence
- ATGGGTGGCCCTATAACAGCAGCAACATCGTCGTTACACCATACACCAACATCCGCTATTGCAGCAGGAGCACCAACACATGCGCCACCACCACATGCACCACCACATCCCCGCCAGCAGTTGAGGGTGAATAGCTATGTGGATTGTACGCTCGTTGTCGATGATGATCAATTCAAGGCACATCGTGTTGTGCTTGCCGCAAATTCGCCATATTTCCAGACTATATTGCAAGATGTGCCACAGGATCATTGTAGCATTATATTGCCCGGTGTTAAGGGTTTTGAAATTGCTGCTTTGCTGCAGTATATGTACACCGGTGAGACTACGGTGACAAAGCGTCAAGAACCGGAAATCTTACGCACTGCAAAAGAGTTACAGGTCAAAGGTTTATATGATAATCTTATGAAATTTAATCAAAAAGATACAGAACAGCAGCAGCATTATGCAAGCACAACGCCACATAACGCAGCGCCATATGCAGCAGCAGCTACATCCTCATCGGGTGTTGGCGGTATTTCACATAAAAATGGACCCATACATAATGGCAGCGGCATTGATGCTGCTGCTTATGGTGGTGCACACAATTCCTCAAGCGTGATCTCAACTTCATCACAACATATATCACCGAATGCAGCCATATCGAGTAGTTCCTCACCGCCATATAGTGGTGGTGGTGTTGGTCCAGGTGCTGCTGCTGATGCTATAGCAGCGGCAGCAAATTATCAACAGACGCCTTATACAAACATGTACCGTAGCAAATCACCCATTAATGAAGCCAATGTCGAGTCACATAATCATGCACAAAATGCTGCCGATTTAGCGGAACGCGCTGCCTGGCCATTGACACCAAGCGCTGCTGCTGCTATAAATCGTGATACGCCCATATTACGCAATGTGCTCGCTAATCCTGCTGACTCGTCACAACCGAATACATTAATGCTGCCCAGCGTGCTGAAACCAGAGAAGCAAAATGCTGCAAATACGCATGGCAACAATACCAGTCATAGTTTTAATGGCTCTGACTATGGTAGTGAAAAGTATGAACCACTCTCACCGCATACAGATCGCTCCTTTGACGATGAAGCAGGCGGCAATAACTCGAGCATGGACAAACAAAAACCCGAATGGAAACGTTATAAACAATATACACGCAACGATATGATGTGTGCCATACAATGCGTACGCGAAGGTATGTCTGCGTTACAAGCTTCACGTAAATTTGGGCTACCCTCACGCACATTGTACGACAAAGTACGTAAGTTAAATATCAATACAGGACGCGGTACGGGACGCACACCAAAACGTAGTTCACCGGGTAGCGTAGAATCCTCGCCAGCATTTCCTTATCATGCACACAGCTATGGACACGGGCAGAGCGAACAACAATTACTCTCCTCGTTGAAACATGACTCACGTGATGCGCACGGTGCTTATGCTGCTGAAACGCGTGAAGAGCGTGAAACAAAAGAACGCGCTGAAGCTGCTGCTGCTGCGGTAGCAGCTGCGGCAGCAGCGCATCATATACCCGCAGGTGGTATGCCACATTCCACATTGTTGGATCATGCTTTTCTGCAGCAGGCGCTAGAGAGTCGCGGTGGTGATATAGCCGGACGTGAGGCGTTACATGCTATGGCGCTGGCAGCAGCAGCACATGCAGCAGCAAATCGATTGTCAAATAGTCCACCGGGCGCAAATGGTCACTCATCAGCGGCGTTAGCTAGACGCACACCAAGTCCAATGCGCTATGAGTCAGCAGCAGCAATAACGGCGGAGCAACATCATCATGAAAAGCAGGAACGTTTTACCATAAAACGTGAAATTATAGATACGTCACGTGAAGAACGTGATGCAGATGATGAGGATGATCATGTTGAAGATTTATCGGTAACACGTAAAAAGCAGCATAAACGTGCTGAGGCAGCATATACAACCCAAACACCACCACCACCACCGCCGCCGCGGCAAGCAGATGCAGATTATATGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCAATAAATCTGCTGAATCCTCGGGCGCTATAGATTTTGAGCGTGAAATTACCAAACGTGAATTAATTAGCGATGCTGACTGA
- Protein Sequence
- MGGPITAATSSLHHTPTSAIAAGAPTHAPPPHAPPHPRQQLRVNSYVDCTLVVDDDQFKAHRVVLAANSPYFQTILQDVPQDHCSIILPGVKGFEIAALLQYMYTGETTVTKRQEPEILRTAKELQVKGLYDNLMKFNQKDTEQQQHYASTTPHNAAPYAAAATSSSGVGGISHKNGPIHNGSGIDAAAYGGAHNSSSVISTSSQHISPNAAISSSSSPPYSGGGVGPGAAADAIAAAANYQQTPYTNMYRSKSPINEANVESHNHAQNAADLAERAAWPLTPSAAAAINRDTPILRNVLANPADSSQPNTLMLPSVLKPEKQNAANTHGNNTSHSFNGSDYGSEKYEPLSPHTDRSFDDEAGGNNSSMDKQKPEWKRYKQYTRNDMMCAIQCVREGMSALQASRKFGLPSRTLYDKVRKLNINTGRGTGRTPKRSSPGSVESSPAFPYHAHSYGHGQSEQQLLSSLKHDSRDAHGAYAAETREERETKERAEAAAAAVAAAAAAHHIPAGGMPHSTLLDHAFLQQALESRGGDIAGREALHAMALAAAAHAAANRLSNSPPGANGHSSAALARRTPSPMRYESAAAITAEQHHHEKQERFTIKREIIDTSREERDADDEDDHVEDLSVTRKKQHKRAEAAYTTQTPPPPPPPRQADADYMETXXXXXXXXXXXXXXANKSAESSGAIDFEREITKRELISDAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00891983;
- 90% Identity
- iTF_00891983;
- 80% Identity
- iTF_00891983;