Lvar012932.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010003025.1:5396270-5398055[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.2e-13 1.5e-09 37.8 0.0 3 41 296 334 295 336 0.90 2 3 0.0069 20 5.4 0.0 27 37 367 377 363 383 0.88 3 3 7.1e-19 2e-15 56.5 0.0 4 41 406 443 404 445 0.95
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGCCACTCTGGTACCATATTGGATATAAATCGTGCGCTACGCAGTGATGAACTGAGCTGCGAGGTAACTCTTGTGACCAGAGATGGCTGCACACAGCGGGCACATCGTTTTGTGCTTAGCACTTGTAGCGATTTAATGCGAAATGTGCTGGTCGACGTGCCGCAAGGGCAAGAATGCACCATTATGCTGCCGGATATAAATGGCATACTGTTGGATAGCATGCTCTCGTTCATTTACATCGGCGAGACAAATTTGCCATCGTCCAGTTTAACCGAGTTTCTGGAGGCTATCAATATGTTGGGCATAAAGTCAGCCATCAGTTTTGAGTGTACACCGAATAGCGTAAACACAAGCCTCAATTCGACAGCACTTGGCGATCTGACCAGTTCAAATCTAAAATCAAACAGTATGCTGCAAATAACAACAGAGGAGCTATTGGAAGAGGATGGTGGTGGCGGCGGTGTTGTGGAGAAAATTGTGCCAGACAACGCTCTTACCGCCGAACCACAAGCTGCGGCTGCGCATGAAATTGAATTTCTTGATGTCTACAATGGTGCCAATGACCAACCCAAGATAACGTATTCCATTGAGCACATGGGCGGCGGCGATGGACAAGAATATAATAATTCGGAACCGCTTATTGAAATGTCAAAAGTGAATGATTTAAATGATAGTGCTGATGTGGAGATGGCTGCAGATAATGATGCTTCCGATGCACAACTACTTGAATCGGTAAAGTCGAGCATAAAGGCGAAATCCGCCAAGATGCGTCAAGAGCAAGCTGAGCAAAGAGCACTACGTGAACAGTTTCCAATTATAAAAATACGACACAATGTTTCAAAACCTAAAAACCCGATTGAATTGGATAATTTAGATAATGCTGCGCATGCTGTTATTTACGAAGGTTTAAGTTTGCAAAAGGCTGCCGATAAGTTTCATATCTCAAAGACTGTACTATGGCGTCGTGTACGCAAGGAACCAAATTATGTAAGCACTGGCCGCGAGAAACCGAAACTAACATTGGCCTATGAGCGGCTGAAGAGTGGTCATTCGCTGAAAAGTATAAGTAAAGATCTGGATATACCAATGTCAACATTGCATCGTCACAAAGTACGCCTCTCGCATGAGGGTCGTTTACCCAAATATTTGGCTTGTCGACGCCGTGATTCAACGCCAAAAGATGAGCTACAACAAAAATTGGCCAAAGCAGTGCACGCCTGCGTTAATGAGGGCATGTCACAGAATCATGCGGCGAATTTATTTGAAATACCTAAAAGTACTTTGTGGCGTCATTTGCGACGTCGCGTTTTTGATGCAGAACAATCAACGGGCAATTCGGATGATATTAAAAAGGAATTAACGCTAAAGTAG
- Protein Sequence
- MNHLKWMGHSGTILDINRALRSDELSCEVTLVTRDGCTQRAHRFVLSTCSDLMRNVLVDVPQGQECTIMLPDINGILLDSMLSFIYIGETNLPSSSLTEFLEAINMLGIKSAISFECTPNSVNTSLNSTALGDLTSSNLKSNSMLQITTEELLEEDGGGGGVVEKIVPDNALTAEPQAAAAHEIEFLDVYNGANDQPKITYSIEHMGGGDGQEYNNSEPLIEMSKVNDLNDSADVEMAADNDASDAQLLESVKSSIKAKSAKMRQEQAEQRALREQFPIIKIRHNVSKPKNPIELDNLDNAAHAVIYEGLSLQKAADKFHISKTVLWRRVRKEPNYVSTGREKPKLTLAYERLKSGHSLKSISKDLDIPMSTLHRHKVRLSHEGRLPKYLACRRRDSTPKDELQQKLAKAVHACVNEGMSQNHAANLFEIPKSTLWRHLRRRVFDAEQSTGNSDDIKKELTLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00892015;
- 90% Identity
- iTF_00892015;
- 80% Identity
- iTF_00892015;