Lvar016607.1
Basic Information
- Insect
- Leucophenga varia
- Gene Symbol
- -
- Assembly
- GCA_018903435.1
- Location
- JAEIFJ010000935.1:9432643-9437642[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-11 3.7e-08 33.3 0.0 1 38 333 371 333 376 0.89 2 4 3e-14 8.5e-11 41.7 0.1 2 39 388 425 387 428 0.94 3 4 6.3e-18 1.8e-14 53.5 0.0 1 45 442 487 442 487 0.98 4 4 3.1e-19 8.9e-16 57.7 0.0 1 45 494 539 494 539 0.97
Sequence Information
- Coding Sequence
- ATGGGTCTTTTACGCACCGCTGAACAGTTAAAAATCAAAGGACTCTGTGAAACCGCTGAGAATGCTGACGATCTAAACGACGCTGCCACAGCAACAATTACTGTTTCAGAGAATATACAGCAAACTGTTGTTGGTAATATTACTATATTAATACAGAGTCAGGATCAAACATCGATTGTTAGTTTACAAGGTGGCAGCTATATACCCGTACAAACAGTAACAACAAGCATAGCTGGTGGTGAAACGCATCACATTGCTGCTGGTGGTGACGACGATTCAATTGACATTGATAAACCATCGCTACAAAAGATCTGTAAAACTGAACAATCCATTGCATCGCCGGCATCAACATCGTCAACATCGAATAATGCGACAAGTGCAAACGGTGCAGCAGGTGTGACAACATCAATAACAACAGCCGGAGGAGGAGGAGGAGCAAGTTGTGGCAGCGGTGGCGGAGGAGCAACAGCAACAACAGCAGCACCACCGGGCACAGCTATTGTAACACAAATTGTAGTATCGCGCGACGGAAAAGAAAAGAATATGACTAGTTTAGGCATGGGCATGAATGGAGGCTTGTTAGGCGTGCCCATGGGATTTTTGGACTTTACACCCGAACCACCAGCACCATCAGCCACACCAGTTACCGTAACGGAACACGTCGATCTCTCTTGCAATCCAAGCACGGATACACGTGATCTATCAAATCCCACCGAACCGCTCGATATCGACAATCACTTGATTGATCCGAGCCAAATAAAACATGAACCAGGCATGATTATAACGCCCGAGATTGTCAATATGATGGGCGCTGGGCATATGGATATGTATAATTCCGATACGAGTGAGGATTCAATGATGATTGCCAACGGTTCTCCGCACGATCAGAATGAGCCGCACTATACGAATTTGGATCAACAACATGGCGGCAGCGGTGCTGGTGGTGGCGGTGTTGGTGGTGAGATGAAAGGTCAGTTTAATGGTCCTAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCCACCACCTATGGCATACCGTCGACCACACTATGGCAACGTGCTCATCGCATGGGCATTGAAACGCCAAAGAAGGAGGGCGGCACAAAATCATGGAATGAAGATGCATTGAATAATGCCCTGGAAGCACTACGTTCTGGACAAATATCGGCGAATAAAGCGTCTAAAGCCTTTGGTATACCATCGTCGACATTGTATAAGATTGCACGTCGCGAGGGTATACGTTTGGCAGCGCCCTTCAATGCCGCGCCAACCACGTGGACACCGGAGGATTTGGAGCGTGCATTGGAGGCAATACGCGCCGGTAATACGTCCGTACAGAAAGCAAGTGCTGAATTTGGCATACCAACAGGAACACTCTACGGTCGCTGCAAACGCGAGGGCATCGAGTTATCGCGTTCAAATCCAACGCCTTGGTCTGAGGAAGCAATGAACGAAGCTTTAAATTCAGTGCGTGTCGGACACATGTCTATCAATCAAGCGGCAATACATTTTAACCTGCCCTACAGTTCGCTCTACGGACGTTTTAAGCGTGGAAAGTACGATGTATCCAACACAAGCGGTACTTCGCTAAATAATACATCAGGCAATACATCCGGCAGCATTGAAATTATCGAGCATAGTCAAGAGAATTCTTTGCATATGTTGCAGCAACAGTTCCCATATAGTCCGTCGCCACATCAACAACCACCGCAGCATCATAGTACGCCACAAGGATCACAGACGCCGCAACATTTACAACAACATGTTAGAAGTTGA
- Protein Sequence
- MGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQTVVGNITILIQSQDQTSIVSLQGGSYIPVQTVTTSIAGGETHHIAAGGDDDSIDIDKPSLQKICKTEQSIASPASTSSTSNNATSANGAAGVTTSITTAGGGGGASCGSGGGGATATTAAPPGTAIVTQIVVSRDGKEKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLIDPSQIKHEPGMIITPEIVNMMGAGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGSGAGGGGVGGEMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASTTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDALNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEEAMNEALNSVRVGHMSINQAAIHFNLPYSSLYGRFKRGKYDVSNTSGTSLNNTSGNTSGSIEIIEHSQENSLHMLQQQFPYSPSPHQQPPQHHSTPQGSQTPQHLQQHVRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -