Lmon013058.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- Lip3_1
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010001407.1:542491-569741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.03 1.8 9.5 0.5 2 23 403 424 402 424 0.96 2 15 0.01 0.61 10.9 0.8 1 23 430 453 430 453 0.91 3 15 2.5 1.5e+02 3.4 0.1 3 23 458 481 456 481 0.89 4 15 0.057 3.4 8.6 0.1 1 20 489 508 489 510 0.93 5 15 1.4e-05 0.00085 19.9 2.4 1 23 518 540 518 540 0.98 6 15 0.019 1.1 10.1 2.7 1 23 546 568 546 568 0.97 7 15 0.00076 0.045 14.5 2.6 1 23 574 596 574 596 0.95 8 15 0.024 1.4 9.8 0.4 1 23 1064 1086 1064 1086 0.97 9 15 0.24 14 6.7 3.8 1 23 1094 1118 1094 1118 0.95 10 15 0.047 2.8 8.9 4.0 2 23 1123 1144 1122 1145 0.94 11 15 0.00055 0.033 14.9 0.1 2 21 1163 1182 1162 1183 0.94 12 15 0.0009 0.053 14.3 0.1 1 23 1191 1213 1191 1213 0.97 13 15 2.6e-06 0.00015 22.3 2.8 1 23 1219 1242 1219 1242 0.98 14 15 0.00015 0.0087 16.7 1.4 1 23 1248 1270 1248 1270 0.98 15 15 0.00041 0.024 15.4 2.2 1 23 1276 1298 1276 1298 0.95
Sequence Information
- Coding Sequence
- atgcTGTACAAATTCTTTATGCAACATTTGCGCTCCTATATTGTTGCAACATTTGCTtcacttttgctgctgctgttctttgGTTTGCATTTCGATTATGCGGAAACACTTAAAATGACGgCTTCACTGATTACAAACCACAATTATCCCGTGGAAGAGCATACAGTACACACGCCAGATGATTATATACTGACGATATATCGCATTCCTAACTCACCAAAGCTGCCCGATTATAATGCAACAAAGAAACCGGTTGTCTTTCTACAGCATGGCATCTTGTGCGCCTCGGATGATTGGATCATCAATGGGCCGGAGACTTCGCTGGCGTATATGTTTGCCGACTCCGGCTATGATGTCTGGCTAGGTAATGCACGCGGCAATACATACTCGCGACAGCACAAGCATCGGCATCCGGATAATTCGGATTTCTGGCGTTTCAGTTGGCATGAGATTGGCGTTTACGATCTGGCAGCCATGTTGGATTATGCGTTGTCGGAGACGAATTCCAGTTCGCTGCACTTTGTCGCACACTCACAGGGCACAACGACATTTTTCGTGCTAATGTCCTCGCTGCCGTGGTACAACGAAAAGGTGCGCTCCGTGCATCTACTGGCGCCCATAGCCTTTATGCGCAATCATTCATTCCTGCTGTCCAAATTGGGCAGCATCTTTCTTGGTTCACCGTCATTTCTCAGTTGGGTACTGGGCAGCATGGAACTGCTGCCGATTACAAACGCACAGAAACTAATGTGTGAATATGTTTGTTCAATGGAATCAAGGTTCAAGTTTCTCTGTTCTGGTCTTTTGGACCTGATAGGCGGCTGGGGCACACGACATTTGAATCACacactgcTCACCGATGTCTGTGAGACACATCCCGCGGGTGCATCAACTACACAGATTATACACTATCTACAGCTTTATACATCGGGTGACTTCCGTCAATACGATCACGGCAGAAAACTTAATCTGGAGATCTATCAGCAGCCAACGCCACCCTCATACAAGATTTCAAATATCAGCAGCTGCGTTAATCTCTACTATAGTGACAATGACTATATGTCAGCGGTGGAAGATGTAGAGCATCTGGCGACTTTGTTGCCCTatgcagcagcagcaggagcagcgaCAACAAAAAATGGACAGACATCATCGGCGGCGTCTGCGATGCTGGTGCAGATTACGACAGACGGCATTCCGAAGCTGCACTGTCCGGTGTGCAATAAAGCGCTTGTTTCACTCAATGGTTATGTGAAGCACGTAAAGAAGCATGAACCGCCGGGTGGTTTCATTTGTCGCTACTGCGAGGCGCGCTACTGCTCCGAGGAGGAGCTCAAGCGGCACTTGGATGCGGTGCATATAACTATAGCGTGTCgcatatgtaaaaataatgcaacattTACCAATGAGCAAGACTACCGTGAGCATATAAGTGTTGTGCATGGTGGGCTCGACCGTGAATTGTTTACGTGCGACAAATGCGGCGCGGAATACAAGACCATTGAGCCTTTCAAGCGGCATGTGGATACACAGTGCGGCACAGTGAAACCATTCAAATGCGATCAATGCGAAATGTCCTTTGTGACCAAATACAATCTGAAACAACACAAGGAGACGCACAGCGGCGAGCGGAAGTTCTGTTGCAGCTATTGCGGTAAGAACTTCTTGCAGAAGGGACGCTTGGTTGAGCATGAACGCTCGCATACGGGTGAAAAGCCATATAAATGTGATGTTTGTGGCAAGTGTTTTGCGCATCGTGAGAGCATCGTTACACATTCTTCAATACACACAGGACTGCGTCTGGTTGAATGTCGTTGCTGTCATTCGCGCTTCTCCTGCTATTCCAATTTAATAAAGCATCGGCGTACGCGTCCTGATACTTGTGGCCAACCGGAATATGATCCGCCCAAGAATCGCGTGCGGACGCATAGATCACGCAtTCCTGCAACACTTAATCCTTCATCGGAGATAAAGGTCAGCAATTTGAATAAGGTTATAAAGCCGGATgatttggaaaaacaaaaacaacagccgAAGCCGCCCACGCTTAAGATTGTTCCAGACAAATTATTGGGTAAAAAGGGTGCAGCAACAGTCAAAAAACGCGGCCGTAAACGTAAAATTTCGGCAGCAGCAGAAAGCACAGATTCGGATGACAGTTCGGAAGCCGCTGCGCATTTCGAGGTCGAATTTAACACACAAAATTCGGATAGCGATGATGAGCCGCTGGCCAATAAACGTCAAACGCGTAAATGCGTTATTCCCACACTGCCATTAAAACAGGAACATGAAGCATCAACACATTGGACTGAtacggatgatgatgatgatgactgtcCAGATTTTGATCCAGTCGATAGCGGTAGTGATAAGGATTTTAAACTACCAGCGCCTGTTAAACAAGAGCTGGAAAATGATGACAGTTTTGTGTACACAGATGCCAGTGCATATGTAGAGACAGATTGTGCATTAAAACAGGAGGAAGTTGTTAATATATTCAATGAGAAGGATAAATTACTTGATGTACTACTAAAAGAGGGCTGTGAAGAAGATAATGATGCACAAGAAGAGTTTATAAGTATTAATGGCGATGATTTGTCACCACGAATTAACAGCGTCAAAATGGAAGATAATGATATACTCAATGAAACCGAAGTGGTTTTAATAAAGGAACAACAAGATAATGCCGAATTGTTAACAACAGAAGAGGATGTACTGGCCGTGAAACCTTTATCGCATAATGATTTCGGTGATTGTAAAATAATGCTTGAAGATATAACAGTACGTTATCCGAAGCTCAAGGAAGACACTAGCGTCAAAGTGGGACGCAATGTGCGAACTAAATTGGTTacgccaacaaaaacaaaaaaacagtcgAAGAAGGAGCAGCATAGCAGCGACTTGGAAGAGGAGAAACCCAAACGCAAATATCGAAAACGTGGCGAAGCAAAAACACCGCCACCAAATGCACCCAAACGCATGGCGAAAATTTCGCAACAGCAACTGAAAGAGCGacttaaaatgcttaaaaaagaGGAGAAATCCTGGAAATGTCCACTTTGTATTAAAATCTATCACATGCGTAAAccgtatgaaaaacatttgcgGCACGATCACACGCTGGATGAGGAGAAAATTAAGGAGCTATTTAAGCATGAAAGAGCCACTGACGAATTGGATGgtgaagtttttaaatgtaaaatatgcgataaaatttatttaatggaaAAACGTTTAATTGCGCATATGAATTTACATGGAACGGATGGCGCTTTAACGCACAAGTGTCCTTgctattgtaatatatattttgccaCTAAAGATGAAGCCACTGCACATGCACACAAAGAACATCGTGATTTACTATACTGTACAGAATGCGATAAGTTTATGACTGGACACGATAGTCTTAAGAATCACataaaaaatcatcatcattCCAAGGACACGGACAAGGAACCACGTGGTAGCATGCCACGTAATCTAGTCTGCGATAAATGTGGCAAAAAGTTCGCAGGTCGTACTTCGCTAACGGATCATGTGCGTTCCGATTGTGGACGTGTGCCGTTGTATCCGTGTCCTGTCTGTGGCAAACATTTAACAACGGCCGGCATATTGAAAACACACATGCTGCTGCACAAGGACGATACACCGTATCAATGCGATAAATGCGGCAAAACATTCAAAGTAAAAGCACAATATAAATCACATTTGAAAACGCGACACACCGACTATAAACCATTCAAGTGTCAtCTCTGTCCCAAGGAGTATCCCTACCGTGAAAGTCTGCTAACGCACATGACAGTGCATACGGGCATCAAACGTTTCCTGTGCAATGGTTGCGGCAAGCGTTTCACTTGCATCTCGAATCTACAGGCGCATCGGAAAGTGCATGCAGACACCTGCGGTCAACTGCCGCTGAATGCAAAGGCTACCCAATACATGGGCGTACAGAAGGGCAATTTGCTGCTGGGCGCTAAACCTGAAGCCGGTTTGGAATATCAGGAAACAAATACGCTCATAGCCAGAGATGTTCTCGATCGTGATATGCCAATGGCGCAGGAGTTAAATTTTCCCTCGGAACCTTCAGCGCCGTTGGCCACAGTGCCGCTCAATTATGCCGGACAAATTCCTGCGCAGGAGTTTATATTACCGGCCGGAAGCACTATAACCCATATGATCGTTGATGATTCGCTTTCAACGACGACGCCCAAGCTTGaagaattttag
- Protein Sequence
- MLYKFFMQHLRSYIVATFASLLLLLFFGLHFDYAETLKMTASLITNHNYPVEEHTVHTPDDYILTIYRIPNSPKLPDYNATKKPVVFLQHGILCASDDWIINGPETSLAYMFADSGYDVWLGNARGNTYSRQHKHRHPDNSDFWRFSWHEIGVYDLAAMLDYALSETNSSSLHFVAHSQGTTTFFVLMSSLPWYNEKVRSVHLLAPIAFMRNHSFLLSKLGSIFLGSPSFLSWVLGSMELLPITNAQKLMCEYVCSMESRFKFLCSGLLDLIGGWGTRHLNHTLLTDVCETHPAGASTTQIIHYLQLYTSGDFRQYDHGRKLNLEIYQQPTPPSYKISNISSCVNLYYSDNDYMSAVEDVEHLATLLPYAAAAGAATTKNGQTSSAASAMLVQITTDGIPKLHCPVCNKALVSLNGYVKHVKKHEPPGGFICRYCEARYCSEEELKRHLDAVHITIACRICKNNATFTNEQDYREHISVVHGGLDRELFTCDKCGAEYKTIEPFKRHVDTQCGTVKPFKCDQCEMSFVTKYNLKQHKETHSGERKFCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGLRLVECRCCHSRFSCYSNLIKHRRTRPDTCGQPEYDPPKNRVRTHRSRIPATLNPSSEIKVSNLNKVIKPDDLEKQKQQPKPPTLKIVPDKLLGKKGAATVKKRGRKRKISAAAESTDSDDSSEAAAHFEVEFNTQNSDSDDEPLANKRQTRKCVIPTLPLKQEHEASTHWTDTDDDDDDCPDFDPVDSGSDKDFKLPAPVKQELENDDSFVYTDASAYVETDCALKQEEVVNIFNEKDKLLDVLLKEGCEEDNDAQEEFISINGDDLSPRINSVKMEDNDILNETEVVLIKEQQDNAELLTTEEDVLAVKPLSHNDFGDCKIMLEDITVRYPKLKEDTSVKVGRNVRTKLVTPTKTKKQSKKEQHSSDLEEEKPKRKYRKRGEAKTPPPNAPKRMAKISQQQLKERLKMLKKEEKSWKCPLCIKIYHMRKPYEKHLRHDHTLDEEKIKELFKHERATDELDGEVFKCKICDKIYLMEKRLIAHMNLHGTDGALTHKCPCYCNIYFATKDEATAHAHKEHRDLLYCTECDKFMTGHDSLKNHIKNHHHSKDTDKEPRGSMPRNLVCDKCGKKFAGRTSLTDHVRSDCGRVPLYPCPVCGKHLTTAGILKTHMLLHKDDTPYQCDKCGKTFKVKAQYKSHLKTRHTDYKPFKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQKGNLLLGAKPEAGLEYQETNTLIARDVLDRDMPMAQELNFPSEPSAPLATVPLNYAGQIPAQEFILPAGSTITHMIVDDSLSTTTPKLEEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -