Lmon012390.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010001369.1:704638-710931[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.1e-05 0.0018 18.9 1.1 2 23 36 57 35 57 0.97 2 10 0.15 8.6 7.3 4.7 1 23 63 85 63 85 0.97 3 10 0.00094 0.055 14.2 0.4 1 23 91 113 91 113 0.95 4 10 0.00033 0.019 15.7 5.1 1 21 119 139 119 141 0.95 5 10 3.1e-06 0.00018 22.0 0.5 1 23 147 169 147 169 0.98 6 10 0.00021 0.012 16.3 0.3 1 23 175 197 175 197 0.96 7 10 1e-06 6e-05 23.6 1.5 2 23 369 390 368 390 0.97 8 10 0.00057 0.034 14.9 3.0 1 23 397 420 397 420 0.92 9 10 1.4 81 4.3 3.8 2 23 469 491 466 491 0.89 10 10 1.7e-06 0.0001 22.9 2.0 1 23 506 529 506 529 0.97
Sequence Information
- Coding Sequence
- ATGAATACGTGCAACAAAGATGATGATGAGGAGTACTATTCCGACGAAGCAAACAAGAATGTAGAAGAGTCAACCAAAGAAACACTTAAACCCAATAATCAAATTGTGTGTTCCCAATGTGGTAGAAACTTTTCGAGCTATCAGTTACTGAGACGCCATGAAAAGCGACACACCAGCGAACGTTCTTTTGAATGTTCCACTTGTCCACTGAGGTTTACATGCCGGACTGATCTGACTCACCATTCTGCAACTCATAGTgtgttaaagaaatttttatgcgATATTTGCGGCAAAGGATTTGCCGCATCTTATGCAATGAAAACTCACAAAAAGTATCATACTAATGTAAAACCGTTCGCATGCAAGCACTGTGGCTCGAGATTTGTACGGAACGATACTTTGCGAACCCATATGCGTTGTCACACAGGCCAGaagccatacaaatgtatgtactgCGAGCGGGCTTATGCTCAAAGTAGCGATCTTATAAAGCATTTGCGATTGCATCTTGGCGAAGAAGTCTACAATTGCGATTTTTGTCCACAAGGATTTCGACTGGCCTCCGAACTGCGAAAGCATCTTTCGGAACATAAAAGTGAGAATGCTTCTACGAGAGCACGAAATCTAGCAGGTCGACTAGAGAAAGAggctaaattaaatttgaagctaCTGCGTTTTCCATCGCAGGCTGAAGGAAACGGAGACCCTAGGCATTTAAAGAAACCAGTATTAATAGAAACTAAAAATACGGCAGAAGACCAAACTGATGAATTGATTTTGGTAGAAAACACAAATGAATTAGTTGAAGAAGAAAATGCGTTGGAAGTAGAGGAATACTGGATAGAAACTATGGAAAGTGTTAAGGATGAAGAAATCAAAATAGAGTATGAGCCATTGGCGCATGGTTTGGTGTATAACAAGTTTATTAATTTAGAAATCGCTGAATCGTATAATTCTGCTGAACTGCAAAAATCGGAAGAACAACCCCAGTTTGTAAAAATGGAGTCTTACGACAGCAATTACGATTCCATCGAACCAGATGAGTATATAAAAGAGGAAGAGACAATTGATGCAGAAAATCAAACGCTTACACCTACGAAGTTACAGTGTACGGTTTGTGGCAGGATATTTCGTAAAACATTCAATTTGCGACGTCATATGAAGGTTCACATAATTGAAGATTATCCTTACGTATGTAAAGAATGTGGCTGCTGTTATAAAGAAAAGGAACAACTAAGAGTACACAAAATCGCGGAACACAGTTCTCCTAATATCAACTATGACACAAATTCGAATGACAGTTTATTTGCTGTACAGCTAGCAGGTGAGTTGCCAAAGGACAAAGTACAAAACAGAGCACCAGCTGCTACGGGACCGGAGCTGTCAGGCGAAACACATAAGTGCTTCTGCGATCAATGTGGCACAGAATTTGAATCTATGATCTCACTTGGTAATCATAAGCATATTGCGCATGATCTTAACGACGTTGGAGATAATGGTGAAATCAGcaaaaaaCATCAATGTACTATCTGTGGAAGGAGTTTTCCTAAAGGATACAATTTACGTCGGCATATGACGAAAATCCATAAAATTGAAACTCATCCTAACGTATGTGAGGAACAACTAAAAACGCATGAAACTACGGAACACAGTTCACCTTCAAGTAGCATCAACGACAATACAAATTCTGATGATAGCTTATTTGTTGTACATAAATTTGATGATGAACTATACAAAGAAGATTCGCTGTCAATGGAAATAGGGGAATATGGCATAACAGAACAAACGCCGAATACgtga
- Protein Sequence
- MNTCNKDDDEEYYSDEANKNVEESTKETLKPNNQIVCSQCGRNFSSYQLLRRHEKRHTSERSFECSTCPLRFTCRTDLTHHSATHSVLKKFLCDICGKGFAASYAMKTHKKYHTNVKPFACKHCGSRFVRNDTLRTHMRCHTGQKPYKCMYCERAYAQSSDLIKHLRLHLGEEVYNCDFCPQGFRLASELRKHLSEHKSENASTRARNLAGRLEKEAKLNLKLLRFPSQAEGNGDPRHLKKPVLIETKNTAEDQTDELILVENTNELVEEENALEVEEYWIETMESVKDEEIKIEYEPLAHGLVYNKFINLEIAESYNSAELQKSEEQPQFVKMESYDSNYDSIEPDEYIKEEETIDAENQTLTPTKLQCTVCGRIFRKTFNLRRHMKVHIIEDYPYVCKECGCCYKEKEQLRVHKIAEHSSPNINYDTNSNDSLFAVQLAGELPKDKVQNRAPAATGPELSGETHKCFCDQCGTEFESMISLGNHKHIAHDLNDVGDNGEISKKHQCTICGRSFPKGYNLRRHMTKIHKIETHPNVCEEQLKTHETTEHSSPSSSINDNTNSDDSLFVVHKFDDELYKEDSLSMEIGEYGITEQTPNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -