Basic Information

Insect: Leucophenga montana
Gene Symbol: -
Assembly: GCA_035044765.1
Location: JAWNNQ010001908.1:351984-354629[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.9 3.5e+02 2.3 1.2 2 19 170 187 169 190 0.88

2 10 0.02 1.2 10.0 3.4 2 23 223 244 222 244 0.97

3 10 0.00011 0.0064 17.2 1.2 1 23 270 291 270 291 0.98

4 10 0.00038 0.022 15.5 0.4 1 23 297 319 297 319 0.98

5 10 0.00058 0.034 14.9 0.7 1 23 352 374 352 374 0.96

6 10 1.9e-07 1.1e-05 25.8 0.6 1 23 380 402 380 402 0.99

7 10 0.0004 0.024 15.4 4.1 1 23 408 430 408 430 0.99

8 10 1.7e-05 0.001 19.7 1.3 1 23 436 458 436 458 0.98

9 10 1.2e-05 0.00072 20.1 0.6 1 23 462 484 462 484 0.98

10 10 0.00043 0.025 15.3 0.2 3 23 518 539 516 539 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.9	3.5e+02	2.3	1.2	2	19	170	187	169	190	0.88
2	10	0.02	1.2	10.0	3.4	2	23	223	244	222	244	0.97
3	10	0.00011	0.0064	17.2	1.2	1	23	270	291	270	291	0.98
4	10	0.00038	0.022	15.5	0.4	1	23	297	319	297	319	0.98
5	10	0.00058	0.034	14.9	0.7	1	23	352	374	352	374	0.96
6	10	1.9e-07	1.1e-05	25.8	0.6	1	23	380	402	380	402	0.99
7	10	0.0004	0.024	15.4	4.1	1	23	408	430	408	430	0.99
8	10	1.7e-05	0.001	19.7	1.3	1	23	436	458	436	458	0.98
9	10	1.2e-05	0.00072	20.1	0.6	1	23	462	484	462	484	0.98
10	10	0.00043	0.025	15.3	0.2	3	23	518	539	516	539	0.95

Sequence Information

Coding Sequence: atgtCACAGGAAGACATTGCTGAACATTTAATATATACGGACAACGTGGAGTATGATGATACGCTGGTTGAGTTTGACGATACGATGGTGGAGTTTGACGATACGATGGTGGAGTTTGACGATACGCTGGTGGAGTACGTTGTGGACCACGGGGATGAACATGAAAGCAGTAGTAATACAATACTTAAAACGCTGGCCGAGCACACACTCTTAGTTTCGTCTAGTGCCGCTGAAGATGATAGCAGCGCAGCAATTTATCACTGTTTAGATTGTGACGCCGACTATGCAAGTATTGAAGAGTTTACGGCAATGCATGAAGCACAAACGCCAACGCATAATGTGGCAAATCCGCACGAATATGATGAACTGCAAGACGAGTTTATAAGCATAGTAGCAGAGGAGCATAGTGCGACAGACGACTTAGACAATGCGGCCAACGAACAGTTTGAAACGACGCAGTTTAAAGTGCAAGCGCCAACTGATGAGATACTCGATGCCGAAGTTGTGATGTGCTGTGACTGTCACAGCGTATTTGAAGATCTTGAATCCGCGGAGGCACATGAGTGTCAAAGTGCAAAATTAGCTGGCAAAATCAAAACTGCTAATAAAAAACGtccagcaacaacagcaactaaagTTGGTGCCAGCGGTAACAATTTAACAGTTTCCTGTAAAATCTGCAATACGCTATTTCATTCTGAGAAGAATCTTAAATTTCATATGCGCATGCATGATAAACGTGCACTGAAATCCATAAATGCTGCATTGCCCGCCGGAGCGCAGCGCCAGTACAATCAACTGCATCAGTTCTACTgtgaaatttgtaataaaagCTTCGATCAGAATTTGCTCACTGTACACAAGAATATGCATCAAGGTGTGCAGGAGTTCACCTGTGGTGTTTGTAATCGTAATTTTGAGAACTTACCCAGCTATGAAATGCATATGAAATTGCATGCGGATAAAAAGCAATTCGAGCACAAAGCACCGCCACGTAAACCAAATGTAGACACAAGTGAAACTACGCAAACCAACACTACGGCGAAAGCCATGCACGCTTGTCAATATTGTGGACGCGAGTTCGGACGGCCTTATGAGAAGGTGAAGCACGAACGCGTACACACCGGCGAAAAGCCATACGAATGTGAAGTTTGTGGACGTACATTCCGTGTATCCTATTCGTTGACGCTGCATTTACGTACGCATACAGATATACGGCCGTATGTCTGTGCTACCTGTAATAAACGCTTCAAATCGCAACAAGTCTATTCGCATCATTTACGCACGCATAATGCAGACCGGGATTACAGCTGCGACATTTGCTCCAAGAATTTCCGCACCTCTGTGCAATTATATGCACATAAGAATAGCCATACAAAGCCCTTCAATTGTACGGTATGCAATCGTCCTTTTTCTTCGCTATACGCTGTCAAAATACATATGAAAACCCATAATCGTGTCGTGGCTGGCATTGAAACTGCTGTTGATGCAGCTAAAACCAACACCGGCATTAAAAAATCTGCCAAATCTTTTGATAATAACAGTCAAAACTGTGAGATTTGCGGTGCTACATATATGCGTCAGTTTGCATTACGTCAACATTTGCGTGATGCACATGGTGTCGAGAACTTTGAACAGTCAACTGCCAAGAGCCACGTAAAAGTTGAGGACAACACAGAAACGAATAATTTCACGGGCGTTGAAGTTAGCGATGCAGAAGCAGTTTTAATTGCAGCAGCTGCAGATGCAGATTATGGTATCTACATGCATGAGAGTGATATCAAAGTTGATGAACAGGAGCAGACACCCGTGTACGATGGCAGCGAATTCTCCATTGAAAACTATCATGCGGAAGAGATCATTACGGACTGGCTGACAAAATAG
Protein Sequence: MSQEDIAEHLIYTDNVEYDDTLVEFDDTMVEFDDTMVEFDDTLVEYVVDHGDEHESSSNTILKTLAEHTLLVSSSAAEDDSSAAIYHCLDCDADYASIEEFTAMHEAQTPTHNVANPHEYDELQDEFISIVAEEHSATDDLDNAANEQFETTQFKVQAPTDEILDAEVVMCCDCHSVFEDLESAEAHECQSAKLAGKIKTANKKRPATTATKVGASGNNLTVSCKICNTLFHSEKNLKFHMRMHDKRALKSINAALPAGAQRQYNQLHQFYCEICNKSFDQNLLTVHKNMHQGVQEFTCGVCNRNFENLPSYEMHMKLHADKKQFEHKAPPRKPNVDTSETTQTNTTAKAMHACQYCGREFGRPYEKVKHERVHTGEKPYECEVCGRTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKSQQVYSHHLRTHNADRDYSCDICSKNFRTSVQLYAHKNSHTKPFNCTVCNRPFSSLYAVKIHMKTHNRVVAGIETAVDAAKTNTGIKKSAKSFDNNSQNCEICGATYMRQFALRQHLRDAHGVENFEQSTAKSHVKVEDNTETNNFTGVEVSDAEAVLIAAAADADYGIYMHESDIKVDEQEQTPVYDGSEFSIENYHAEEIITDWLTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -