Lmon012463.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010001372.1:638772-640409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0016 0.096 13.5 3.1 1 23 281 303 281 303 0.98 2 9 1.4e-05 0.00084 19.9 1.4 1 23 309 334 309 334 0.95 3 9 0.00095 0.056 14.2 0.5 1 23 341 366 341 366 0.97 4 9 8.5e-06 0.0005 20.7 0.1 1 23 371 393 371 393 0.91 5 9 0.00028 0.016 15.9 0.1 1 23 401 425 401 425 0.95 6 9 0.034 2 9.3 0.5 1 23 431 453 431 453 0.96 7 9 0.0002 0.012 16.3 3.2 3 23 461 482 459 482 0.96 8 9 0.00074 0.043 14.5 0.9 1 23 488 510 488 510 0.98 9 9 8e-07 4.7e-05 23.9 1.2 1 23 516 538 516 538 0.98
Sequence Information
- Coding Sequence
- atgCAAGGGCAGCAATCAAATCACGTGTGCCGCGCTTGTTTAACTGCACTGAGCGTATGGACAGGACATTATCTTCTGGATACCGCGCAATTAGCCCACAAGTTCGCATCCTGCAGCACTTTAACAAAGCCTATTATGGTGGATAGTATGCCCAACATGCTCTGCACCAACTGCACGGAAAAGTTACTTgacttttatgaatttcaagTCATGTGCCTGGCTTCAGACAAACATCTACGGGAATTAAACTCCGGCAAAGCATTGCCACTACCGGCTTTGATGAAGTCCGATAGCAATGTTCgcaaaaatccaacaaaaatatcgaaatcaAATATGGCAAAAAATGCTAATAGTAGCGTACAAAAAGCAAATGTATTGGGCAAAAGTGAACATCTGCTAAGGGAACGATTGTCCATTGAGGATACAATGCAGGAGCAGTTGTCCTATGATATCGTTATAAAGGACGAacctgaaattgaaattgataccCAAAATGATGCTTTAATTCTGGAAAATGAAACGGATAACTTTTACGATGCATTCCATTCGAATAAGAGTACCAAGACTCCTGCTATCTGTGAAAATGTTAGCATAGTAGAATCACAAAATGGTTTTTTACTTGAAGATGACTCCGACTCAAATTTGTCAGATAAAAGTGAATCATTACAAAAAGATCATTTTGATCAGAATGATGAATGCAATAGTGTTAACGTTCCAATAGaggctttaattaaaaaagaaatcacCACCTCTGCTACAAACGAAAATGATATCGAAATTGCTcctgtaaataaaaaagatgATCAAAATAAAGTCTTCACGAATCCATTATCCACTGACTACAAATGTGATCTCTGTCCAATGCGTTTTAAAGTCGAGCATTGTCTTATTGCACACAAGCGTGAACACAAAGGTCTACTCCCATATCCTTGCACACACGCGGGATGTGACAAAGCTTTCAAAACTAAACAGTATCTGACCAGGCATTTACAGGGTCAACACAATGAAGAGCAACGCATCTATACTTGCAATCAACCCGACTGCGATGAAGAATTCTTCCTAAGAAAGTCGTTTATCGCCCATATGCGTAATTCTCACAATTTGGATCCATACATTTGTGAAATATGTggcaaaagctttaaaaaacctACATTGCTCATCGCACATCGTCCCACACACAGCGATAGATCTGAATTGCCATTTGCCTGCACTGAGCCAGATTGCGAAAAACGATACGCGAGTGTTTCCACTTTAAAGGTGCACATGGCACGTCATTCTGGCATTAAGAAGTTTGAATGTTCGATATGTGGAGCTAAGAAGGCTTCATCTTTTGAGCTTAAGACACACCTTAATTTTCACACACATGAGAACAGCTGGGCATGTCACTACTGCAGCAAGGTTTTCTATACTTCAAGCCACCGAATATCACACGAGCGTACTGTGCACGAACGCGCCAAGAATTATCCATGTCGTTACTGCGAAGATTCATTTACAAGACCGAGGGAGCTAAAGTATCATGAGATGAGGCATACGGGAGAGAAACCGCACGAATGTGGTGACTGTGGTAGACGTTTTAGGCAGCCAAATGCATTACGAGTACATCGTAAGACTCACGAACGCGAAAAGGAAGCTGAGTAA
- Protein Sequence
- MQGQQSNHVCRACLTALSVWTGHYLLDTAQLAHKFASCSTLTKPIMVDSMPNMLCTNCTEKLLDFYEFQVMCLASDKHLRELNSGKALPLPALMKSDSNVRKNPTKISKSNMAKNANSSVQKANVLGKSEHLLRERLSIEDTMQEQLSYDIVIKDEPEIEIDTQNDALILENETDNFYDAFHSNKSTKTPAICENVSIVESQNGFLLEDDSDSNLSDKSESLQKDHFDQNDECNSVNVPIEALIKKEITTSATNENDIEIAPVNKKDDQNKVFTNPLSTDYKCDLCPMRFKVEHCLIAHKREHKGLLPYPCTHAGCDKAFKTKQYLTRHLQGQHNEEQRIYTCNQPDCDEEFFLRKSFIAHMRNSHNLDPYICEICGKSFKKPTLLIAHRPTHSDRSELPFACTEPDCEKRYASVSTLKVHMARHSGIKKFECSICGAKKASSFELKTHLNFHTHENSWACHYCSKVFYTSSHRISHERTVHERAKNYPCRYCEDSFTRPRELKYHEMRHTGEKPHECGDCGRRFRQPNALRVHRKTHEREKEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -