Lmon004772.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Leucophenga montana
Gene Symbol
-
Assembly
GCA_035044765.1
Location
JAWNNQ010000656.1:132580-135462[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9.8e-05 0.0057 17.3 2.1 1 23 216 238 216 238 0.98
2 16 0.035 2.1 9.3 0.8 2 21 246 265 245 266 0.94
3 16 0.14 8.4 7.4 0.4 2 23 306 327 305 327 0.95
4 16 0.056 3.3 8.6 1.2 1 23 408 432 408 432 0.92
5 16 5.2 3.1e+02 2.4 1.1 1 22 439 460 439 460 0.93
6 16 0.058 3.4 8.6 3.3 2 23 470 491 469 491 0.96
7 16 0.00016 0.0092 16.7 0.5 2 23 500 522 499 522 0.96
8 16 8.5e-05 0.005 17.5 1.1 2 23 530 551 529 551 0.96
9 16 0.014 0.81 10.6 0.1 2 21 578 597 577 598 0.93
10 16 0.0034 0.2 12.4 3.6 1 23 649 672 649 672 0.97
11 16 0.17 9.9 7.1 2.7 1 22 679 700 679 700 0.95
12 16 0.2 12 6.9 3.2 2 23 709 731 708 731 0.94
13 16 4.1e-05 0.0024 18.5 2.4 2 23 771 793 770 793 0.94
14 16 0.0021 0.12 13.1 0.4 1 23 809 831 809 831 0.96
15 16 2.1e-05 0.0012 19.4 0.2 1 23 837 859 837 859 0.99
16 16 2.3e-06 0.00013 22.5 0.9 1 23 865 887 865 887 0.98

Sequence Information

Coding Sequence
ATGGAGCTCTGTCGTACGTGTGGTACGAGTACGGAAACAGAGTTGTACAAACTCAAATCggcatacattaaaaaatatccGGGAAAGCAACTGCTTGATTTATTGAAGGAGCTGATTGATATAGAACCAAATATGGCATATGAGCCTCAACTGCCGCAGCATCTTTGTGGCAACTGCATGTCAAAATTGAGCAACGCCTACGATTTTATGATACAGGCGCGTGAGGTGAATCAGCGACTGCTGGAAACGCTTAAGCTGGACTCGAAGTTAGACACTAGTGAAAGCTGTCTTCAAGAGATGCCTTTGATGGTTGTATGCACGGAGGAACAGGACTTGGTAGATATTAAAGAAGAAGACGAAACTAATGAACCTATTCCTCTATTCGAGTGCTCAGCAAATATAACGGAACAACAGGAGCAGCAAGCATTTATTGAAAGTAATAACAAGATACCACAATTGGATCCATTAACAATAATGAAAAGatcacaaaataataaaacattgcACGCAAAGCAAGATAACTTATTAACGACAGACGACGAACACTATTCCGGCGATGACGATTCATCCATTGATGATTTGCCACTAATAGAGCGAaagaataaaacaacaaaaacagcgcaGACCAAACGTAAGCCAAAGCCCTATGCTTGTGATCAATGCGATCAACGATTTCGTCGTCAACGCGCTTTTAATTTACACAAACGCTCGCATTTGGCCAAGAGTAAATGGCTTCAGTGTCCGCGCTGTCAACATAAATTCGGACGACAGGAAACGCTGGATTTGCATCTGAAGTACGGTTGTAATAAACCGATAACAAAGCCATCAAAAGCATCCGCCGCTATGCTGTGTGAACGAAAGAAAGCAAAAGAGCTTGATGTGAATCTCTGTCAGCCACATGGTTATAAGACTATACAGTGCATGATTTGTCTGAAAACGTTTCTAAAGATTTCACAGCTACGTTCCCATTTGAGTGCACATCCTGAAATAACTGCACTAGCGGCACGTGATACGCAAACCTTAAGACAAATAGCCGATGGCTTCTATTCGGATACGGAAATTGATATAACGGAAACGGCCTTATTGGAACGTATACGTAACGATATGAGCGCAAAacagtttgtaaatttttattcgatAACCAATCAAGCGGgttatgaattaaatttagaTACTTCAGAGACTGAAAGCGATGAAAATGATACCATTGAAGAGAACAATTACAAATGTGATTTATGCGCAGATGTCCAATTTCGACGTAGATATCAGCTTTTCGAACATCAGCGTTTGCAGCATGCCTGGCACGAGGCGCAGCATGTTTGTCTGCGTTGCGATGCACGTTTCCTAAGCGAAACGGTGCTGCAACATCATTACCGTACACAATGTCGTGATAAACATAAACGGCTCATTTGCAAGAAGTGTCCAATGCGCTTTCGCTGGAGACATAACATGAAATCACATTACAGAGAACATAGAACTAAGTTAGATGGTACAATTAAATGCGCACAGTGCAATCGtaaatatgttgatgagaaGACACTCAAAATACATATGCGCATAATGCACACGGATGCTGCGAATTTACTACCATGCCAGTGGTGCCAACGTGTATTCTATCGACGTGATTATTTTCTGAAACATATAAAGCGTCATGGACTGAGCGAGAGCGATTTGCCACTGGCCGAGATGTTAATTAAGGCAACAGAGCAGCCCAATGGTGTTAAACGCATTAGTTGCAAGATTTGTCAACTGCAATTCGAACGTATTACAGATTTAAGAGCACATCTACTGATGGAGCTCAAGTTGAATTTAAGTGCGCATCAAAGCTACGATTCATTAGCCAATTACTCGATAACAAACGAGGCAGGCTTTGAGTTACACTTGGACGATTCGGAAACGGACGATGATGAGTCACCGGGTGGTACAGCACTGCACAGCATACCCTACAAATGTGACGTCTGTCAAGTACAATGTCGCCGGCGTTATGAAATGTTTAGACATCAACGTGCAATGCACATAGTTAAACCTTTGCCCTACGCTTGCAATAAATGCGTATTCAAATGTGTTTCGAAGCGTCTACTCGAGCATCATCAGCTTACGCAATGTAATGAAGTGAAGCAACTGTCATGCCAGCAttgcaattataaatttatgtggCCGGAAAATCTAAAAGAGCATCATCAATTACAGCACAAAGACATCAAAACAGAAGTTAATAATGCTGATATAGTCATGGAAGATATGAGCGAAACGTCAGCTTTAACTAAACAAACCAAATCAGTGCCAGAGGCTGCTACTACGGATGTATTAAATTGTCCACATTGTGATCGCACCTATGTGCATCAATCGAGACTCAATAATCATATACGAGATGTACACAGTGATAACAGTGATgctaataaaaagaagaaaaaggaaCGCAAATATCTCTGCTCACACTGTGGTAAGGAGGAACCATCTCCTTCGAACTTGCTCTTGCACGTACGTCGTCATACTGGCGAAAGGCCCTTCAAGTGTGACTTGTGCGAAATGGCATTTATACGTCAAGCTGAGTTGATAATTCATCGTAGAAAACACACCGGCGAGAAGCCTTTCCAGTGTACTGTCTGTGGCAAGGATTTTGCACGCTACGACAAATTGAAGCGACACACGCTCATACACAGCGGATTGAAAGCGCGCAAATGA
Protein Sequence
MELCRTCGTSTETELYKLKSAYIKKYPGKQLLDLLKELIDIEPNMAYEPQLPQHLCGNCMSKLSNAYDFMIQAREVNQRLLETLKLDSKLDTSESCLQEMPLMVVCTEEQDLVDIKEEDETNEPIPLFECSANITEQQEQQAFIESNNKIPQLDPLTIMKRSQNNKTLHAKQDNLLTTDDEHYSGDDDSSIDDLPLIERKNKTTKTAQTKRKPKPYACDQCDQRFRRQRAFNLHKRSHLAKSKWLQCPRCQHKFGRQETLDLHLKYGCNKPITKPSKASAAMLCERKKAKELDVNLCQPHGYKTIQCMICLKTFLKISQLRSHLSAHPEITALAARDTQTLRQIADGFYSDTEIDITETALLERIRNDMSAKQFVNFYSITNQAGYELNLDTSETESDENDTIEENNYKCDLCADVQFRRRYQLFEHQRLQHAWHEAQHVCLRCDARFLSETVLQHHYRTQCRDKHKRLICKKCPMRFRWRHNMKSHYREHRTKLDGTIKCAQCNRKYVDEKTLKIHMRIMHTDAANLLPCQWCQRVFYRRDYFLKHIKRHGLSESDLPLAEMLIKATEQPNGVKRISCKICQLQFERITDLRAHLLMELKLNLSAHQSYDSLANYSITNEAGFELHLDDSETDDDESPGGTALHSIPYKCDVCQVQCRRRYEMFRHQRAMHIVKPLPYACNKCVFKCVSKRLLEHHQLTQCNEVKQLSCQHCNYKFMWPENLKEHHQLQHKDIKTEVNNADIVMEDMSETSALTKQTKSVPEAATTDVLNCPHCDRTYVHQSRLNNHIRDVHSDNSDANKKKKKERKYLCSHCGKEEPSPSNLLLHVRRHTGERPFKCDLCEMAFIRQAELIIHRRKHTGEKPFQCTVCGKDFARYDKLKRHTLIHSGLKARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-