Lmon004778.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010000656.1:164147-167210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1e-06 6.3e-05 23.5 2.1 1 23 208 230 208 230 0.99 2 17 0.0051 0.3 11.9 6.2 1 23 238 261 238 261 0.97 3 17 0.0027 0.16 12.8 0.3 2 23 298 319 297 319 0.95 4 17 0.59 35 5.4 0.6 1 23 401 425 401 425 0.86 5 17 0.25 15 6.6 3.5 1 23 432 454 432 454 0.96 6 17 0.65 38 5.3 4.8 1 23 462 484 462 484 0.94 7 17 0.00014 0.0084 16.8 1.2 2 23 492 514 491 514 0.96 8 17 0.0019 0.11 13.3 1.9 2 23 521 542 520 542 0.96 9 17 0.07 4.1 8.3 0.0 2 21 569 588 568 589 0.93 10 17 0.087 5.1 8.0 4.8 1 23 640 663 640 663 0.94 11 17 0.024 1.4 9.8 1.8 2 23 701 723 700 723 0.96 12 17 0.00019 0.011 16.4 0.8 2 23 762 784 761 784 0.94 13 17 1.8e-05 0.0011 19.6 1.4 1 23 799 821 799 821 0.95 14 17 0.0012 0.068 13.9 2.6 1 23 827 849 827 849 0.99 15 17 6.3e-06 0.00037 21.1 1.1 1 23 855 877 855 877 0.98 16 17 0.0017 0.1 13.4 3.7 1 23 883 905 883 905 0.97 17 17 8.1e-05 0.0048 17.6 0.1 1 21 911 931 911 935 0.90
Sequence Information
- Coding Sequence
- ATGTCTGTATGCCGCACTTGTGATACAAACTCGGCCACTGAGCTGCATGATCTCAAATCGAAGTACAGCGTAAAGTATCCGGGAAAGCAGCTACTCGATTTATTGACCGAACTAATTGAGATTAACCAAAACATGGCATACGAATCGCAACTGCCGCAACAAATTTGTGCCAATTGCACGGAGAAGCTAAATATCGCCTACGATTTTATGTTGCAAGCGCGTGAGGCTAATCAGCGACTGCTGGACGGTCTCAAACCAGACGTAAAGTTAAGCACTGCCGAATGCTGCTTAGAAGAATTACCACTGGACCAATTAGTTGCTGTTAAACTGGAACCCATCGGCGAAGATGCAATGGTTTTCAGCGTACCGCTTATGGTGTCGTATGAATCAGATCGGGactacaacgacgacgacgacgaagtaCAGGACGATTGTGACATGGGAAGTAAAAAATATGATCCCTTAACACTTATGAACCCAAGAAAATGTAAAACACTGCCAAAAGATGTTGAAGATGCTGTAGATAATGCATCCAGCTTCAGTGATGATGATGCACCACTGCTAAAGCGCAAAACCAAAATGCAAAAGGCTAAGCTGAAGCAAAAGAAGGCAACAAAATCTTATACCTGTGATGAATGCGACAAATCATTTCGCTTAGCAAGCAGTTTAAAAACGCACAAACGGAAACATATACCGAAAACTAAAAAGAGCCACCAATGTACACAATGCAAACGTATATTTAACCGCAAAGATAGATTACATCAGCATGTGAAGAAAGCTCATTCTTCGACCGATGGAGCACCACAGCAGCATATTCCAAAAACTTCCGAACACAAATTGGTAAAAGAACTCGATTTGAATCTGTGCAAACCACATGGTTGCAAGGTGATACAATGCATGATTTGTTTACAAAACTTTACACAAATATCCGAATTGCGTAAACATTTAAGTGCACATCCTGAAATTGAAACATTCTCCAGACGCACAGATACAATTCAAGAGATTGCCAGTTCATTCTATCGTGATATGAAGGAAGATGTTACTGAAGAGAAATTGAAAGCGCGTATACTGAAAGATCTGAGAGCGGAAAAGTATGCGTATTTCTATTCCATAACCAATCAGGCGGGTTACGAGTTAGGCTTGGAAAGTTCAGATACAGATGGTGATGAGGAAGTTAGTATTAACACTGGGAAGCAATTATACGCGTGCGATTTATGCGCAAACACAAAATATAGTCGTAAGTACCAACTACTCGAACATCAGCTGGAGAAACATTCGTGGGAGGAAGCACAACATGTCTGCCGGCGTTGCGAGGCGCGTTTCGTCAGCAAGCAGGTGCTGCAGCATCATTACGAGTCACATTGCTGTAATTCGCTTAAGCGTTTTCTATGCAATCGATGTTCACTGCGTTTCCGCTGGAGACACAATCTTAAATCGCATTATAAGGATCACAGAACTATGCCTATAGCAGTTATGTGTGAGCACTGTGATCGCAGCTATGACGACAAGAAATCGTTAACAATACACAAGCTTACGGTTCACACCGCTTCGACATTGATGCCTTGCCTCTGGTGTAGTCGTAAGTTCTATCGACGTGActattttctaaaacatctaAAGCGTCATGGACTGAGGGAGCATGATTTGCCACTAGCCGAAACGCTATTGAAAGCTACAGCGCAGCCCAATGGTGCTAAGCGCATTAGTTGCAAAATCTGTCTACTGCAATTTGAACGTATTGCGGATCTAAAGGCACATATATTAATGGAGCTCAAGTTGAATTTAAGCGCACATCAGAGTTACGACTCGTTGGCCAATTACTCGATAACAAACGAGGCCGGCTTCGAGTTGCACTTGGATGACTCGGAGACGGATAATGATGAATCGACGGCGGGCAGCACAATGCACACCATGCCGTACAAATGTGAAATCTGCCAAGTGCAGTGTCGCCGGCGGTATGAAATGTTCCAGCATCAACATGCAATGCACTGCCGTGATCCAATGCCGCATACATGCgacaaatgcatatttaaatgtGTAAATAGGCGCATTCTCGAGCATCATCAGCAAAACCAATGTCAGAATCCATCTAAGCAACTGAGCTGCGAGCACTGCAAGTATAAATTTATGTGGCCAGAAAACTTGGAGCAACACCGCAAAATGCAACATGCTGACGTACTCGAGGCCAAAAGTAATGTTGCTGCAAGCATTCCTGAAGGAGCTGAAGAATCGACAGCATCGAGTGCACAAGCAGAGACCAAAGCGGCGCCACCAGCGCTATTAAACTGCCCACATTGTGATCGTACCTACGTACTGCAATCACGACTGAATAATCACATACGAGATGTGCATAGCGAAGCcggaaaaaagaagaaaaaggagTCGGAACGTAAGTTTCTCTGTTCACTGTGTGGCAAAGAGACTACATCGGCTTCCCACCTGGTCATGCACATGCGCCGTCATACTGGTGAAAAGCCTTTCAAATGTGATATGTGCGAGATGGCCTTCCCACGACTGTGCGAAATGCAGCAGCATCGTCGTAAACATACTGGCGAAAAACCGTACCATTGTACCGTGTGCGGCAAAGATTTTGCACGTGGGGACAAACTGAAGCGGCATATGCTGATACACAGCGGTCTCAAACCGCATAAATGCACCTTCTGCGAGAAGAGCTATCGGCAAGGCAAAGATCTTAAGATACActtgcaacaacatacaggtgAAACGCCATTCGAATGCGACATATGCGGAGAACGTTTCATACAGCGTGTAACACTGGAAAAACATCGTGTTATGCGTGGTCACTACGCGGAGTAA
- Protein Sequence
- MSVCRTCDTNSATELHDLKSKYSVKYPGKQLLDLLTELIEINQNMAYESQLPQQICANCTEKLNIAYDFMLQAREANQRLLDGLKPDVKLSTAECCLEELPLDQLVAVKLEPIGEDAMVFSVPLMVSYESDRDYNDDDDEVQDDCDMGSKKYDPLTLMNPRKCKTLPKDVEDAVDNASSFSDDDAPLLKRKTKMQKAKLKQKKATKSYTCDECDKSFRLASSLKTHKRKHIPKTKKSHQCTQCKRIFNRKDRLHQHVKKAHSSTDGAPQQHIPKTSEHKLVKELDLNLCKPHGCKVIQCMICLQNFTQISELRKHLSAHPEIETFSRRTDTIQEIASSFYRDMKEDVTEEKLKARILKDLRAEKYAYFYSITNQAGYELGLESSDTDGDEEVSINTGKQLYACDLCANTKYSRKYQLLEHQLEKHSWEEAQHVCRRCEARFVSKQVLQHHYESHCCNSLKRFLCNRCSLRFRWRHNLKSHYKDHRTMPIAVMCEHCDRSYDDKKSLTIHKLTVHTASTLMPCLWCSRKFYRRDYFLKHLKRHGLREHDLPLAETLLKATAQPNGAKRISCKICLLQFERIADLKAHILMELKLNLSAHQSYDSLANYSITNEAGFELHLDDSETDNDESTAGSTMHTMPYKCEICQVQCRRRYEMFQHQHAMHCRDPMPHTCDKCIFKCVNRRILEHHQQNQCQNPSKQLSCEHCKYKFMWPENLEQHRKMQHADVLEAKSNVAASIPEGAEESTASSAQAETKAAPPALLNCPHCDRTYVLQSRLNNHIRDVHSEAGKKKKKESERKFLCSLCGKETTSASHLVMHMRRHTGEKPFKCDMCEMAFPRLCEMQQHRRKHTGEKPYHCTVCGKDFARGDKLKRHMLIHSGLKPHKCTFCEKSYRQGKDLKIHLQQHTGETPFECDICGERFIQRVTLEKHRVMRGHYAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00891184;
- 90% Identity
- iTF_00891184;
- 80% Identity
- -