Lmon001176.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010000177.1:711381-714629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7e-06 0.0001 22.8 1.4 1 23 220 242 220 242 0.99 2 15 0.0069 0.41 11.5 1.2 2 23 277 298 276 298 0.96 3 15 0.38 23 6.0 1.0 1 23 390 413 390 413 0.95 4 15 0.023 1.4 9.8 2.6 1 21 420 440 420 441 0.94 5 15 0.0089 0.52 11.1 1.4 3 23 452 472 451 472 0.98 6 15 5.9e-05 0.0035 18.0 0.4 1 23 479 502 479 502 0.96 7 15 5.8e-05 0.0034 18.0 1.7 2 23 510 531 509 531 0.96 8 15 0.0021 0.12 13.1 0.3 3 20 559 576 557 578 0.93 9 15 0.0018 0.11 13.3 3.7 1 23 633 656 633 657 0.96 10 15 0.0035 0.21 12.4 1.0 2 23 750 772 749 772 0.95 11 15 0.00027 0.016 15.9 1.0 1 23 788 810 788 810 0.95 12 15 4.9e-06 0.00029 21.4 0.8 1 23 816 838 816 838 0.99 13 15 4.9e-07 2.9e-05 24.6 2.6 1 23 844 866 844 866 0.98 14 15 0.0067 0.39 11.5 5.0 1 23 872 894 872 894 0.97 15 15 0.0086 0.5 11.2 0.2 1 22 900 921 900 924 0.90
Sequence Information
- Coding Sequence
- ATGCTTTTGTCCTCAATTTGCAGGACATGTGATGTCCTTTGGACGCGAAATCTAAAGCTGCATGAGTTAAATTCACGCGCAGACAAACATGAAAAGACTTTATCGGAGCTGCTTTTTGAGTTGACCAGAATTGATCTCAATGTGGAGCCAGATAAAAAGTTGCCGCAACACTTGTGCGGCTACTGTACAAACAAAATCGAAGATGCCTACGAGTTTATTGTGCAGGCAAGAGAAGCGAATGCACAGCTGCTGGCGTGTCTTAATGAAAGCCAGATTGAGGACCTGCCAGCAGCTTCACCAAAAAAAGATGCTATACAACAGTCGGATTGCACAGAAGAACTTTGGGAAGTGAAGGTTGAAGTGGAAGCGGAAAGGCTACAAGAAACACAATTGAAAAGCAGTGACGATGACTACGAATATGTTGAAGATCCTATAGATCCTTTGGTTGCCGAAAATTCGACGGATATAAAATCTGAACAGGGACAGAATGATGCAACATACAACAATAGTATAAGTGAAGATGAATATGACGATTTACCGCTGTCGCAGCGCAAAATTGCAGAGAGCACTGCagtgcagcaacagcagcagccaaagGCAACCGTTCCAAAACCCAAAAAAATCGTTTACAACAAAGCTAAGGAGATGGCGCATGCTTACAAGTGTGATAAATGTGAAAAATCCTATCTACGTCCAAAGAATCTGCAAGCGCATATGCGCACACACAGCGATGAAAATAAATCAATGCGCTCTACAAATCTCTGCGAGCAACGAAAAGTCAAAGATATCGATATTAATCTTTGCAAACCCAATGGCTGCAAACTAATACAGTGCATGATTTGTCTGCGAAACTTCTCAAAATTCACGCAACTGCGTAACCATTTGCAGGAACATGCCACAAATTCAATAACTTTTGATACACGTACGGAGACGTTAGATGAGATTGGCAGATCAttctatacatattttaagAGCTCCAAGCAAGCACCACAACTGGCGTCACGTATTAGAATGGATCTTGCCGATGGCTATTATGCGCGATATTATTCAATAACTAATGAGGTTGGCTATGAACTCAGCTTGGATAGCTCGGAAACAGAGAGTGAAAATGACATAGACAATGACGAATCCTCCCCCTTCAAAGACGAACGACGTTCTAAAAAGAAATATAGCTGTGATCTATGCAAACTAACTTATCTACGCAAATACCAAGTCTTAGAACATCAGATGCAGATGCATAACTGGCTGGAAGCACCACACGTTTGCACACGTTGTGATGCACGCTTTGTAAACGAGCGCCTATTAACGCATCATCACAAATCGTTGTGTAAAAATACGAAGAAACGCTTGCTCTGCAACAAGTGTCCACAGCGTTTTCGCTGGAAGCAGAATTACCGTGCACACATTAAGAATCATCGTGTTAAAGATCAAACATTTGCCTGTACAGAGTGCGAACGTGTTTATGATGATAAGAAATCATTAACAATACACATGCTATCATTTCATGCGGATGCATCCAAATTGCTGCCTTGTCAATGGTGCAATCGCAAGTTTTATCGACGAGACTATCTGCTAAAGCATTTAAAACGACATGGTCTGGCGGAGCAGGATCTGCCGCTGGCTGAGACACTGCTTACGGCCACTTCGAAAGCGAATGGTGCAAAAACCGTATGCTGCAAAGTTTGTAATAAGCAATTTGATCGTATTGGCGCGCTACGTCGTCATCTAATTGCCGAAATTAAGCTGCCGTTTTCTGCGCATCACAGCTATCAATCGCTAGCGAACTATTCGATTGTAAATGAGTCCGGCTACGAATTACACATTGACGATTCGGAGACGGATGAAGATAATTCAGCACAGAGTTTAGGagtaacaactacaaaaacaattgcGGCATATAGTTGTGATCTCTGTCAGATAGTTTGTCGACGTAAATTTGAATTGATGCAACATCAGCGTGCAATGCATCACTTCGAGACACTGCCGCACGCCTGtgatatgtgtatatttaaaactgtttccaGCGATCTGCTTGCGTATCATAAACAAACGCAATGTTTTAATGCAGAAAAGAAGCTACAGTGTGTTAATTGTTGCTATAAATTTATGTGGGCAGAAAATCTGGAATTGCACAGACGCTTACAACACGCAGAACAGTTCGAGTTGCTAAACAATATTCAAATAGATGAAACTCCCGAGAACACAAAGGAGACATTGGAGTCACATCAAGCACCAAAAAAACTATTGCAATGCCCGCATTGTGATCGCACATATCTGCTTCAATCCTTTCTAAATAATCACATTCGCGATGTTCATATTGAtgataatcgaaaaaaaaagaaaaaagaagcggAGCGCAAATTCCTTTGTTCACTCTGTGGCATAGAGACACATACATCCTCGAATCTAGTGATACATATGCGCCGGCATACTGGcgaAAAACCATTCAAATGCAATGAGTGTAACATGGGTTTCATACGGCGTACTGAACTGATTATACATCAGCGTCGACATACTGGTGAACGTCCATTCCACTGTACCGTCTGCGGTAAGGATTTTGCGCGTTCGGATAAACTTAAGCGTCACATGTTGACACACAGCGGTTTGAAACCGCATAAATGCACTTTCTGCGAGAAGACGTACAGATACACAAAGGATCTGAAATTGCATCTACTGCAACATACTGGTGATACGCCTTTTGAGTGTGGCACTTGCGGCGAGAGATTTctacagaacactgccctcgaGAAACATCGTATAATGCGTGGTCATTTTGATGAGgcaaaataa
- Protein Sequence
- MLLSSICRTCDVLWTRNLKLHELNSRADKHEKTLSELLFELTRIDLNVEPDKKLPQHLCGYCTNKIEDAYEFIVQAREANAQLLACLNESQIEDLPAASPKKDAIQQSDCTEELWEVKVEVEAERLQETQLKSSDDDYEYVEDPIDPLVAENSTDIKSEQGQNDATYNNSISEDEYDDLPLSQRKIAESTAVQQQQQPKATVPKPKKIVYNKAKEMAHAYKCDKCEKSYLRPKNLQAHMRTHSDENKSMRSTNLCEQRKVKDIDINLCKPNGCKLIQCMICLRNFSKFTQLRNHLQEHATNSITFDTRTETLDEIGRSFYTYFKSSKQAPQLASRIRMDLADGYYARYYSITNEVGYELSLDSSETESENDIDNDESSPFKDERRSKKKYSCDLCKLTYLRKYQVLEHQMQMHNWLEAPHVCTRCDARFVNERLLTHHHKSLCKNTKKRLLCNKCPQRFRWKQNYRAHIKNHRVKDQTFACTECERVYDDKKSLTIHMLSFHADASKLLPCQWCNRKFYRRDYLLKHLKRHGLAEQDLPLAETLLTATSKANGAKTVCCKVCNKQFDRIGALRRHLIAEIKLPFSAHHSYQSLANYSIVNESGYELHIDDSETDEDNSAQSLGVTTTKTIAAYSCDLCQIVCRRKFELMQHQRAMHHFETLPHACDMCIFKTVSSDLLAYHKQTQCFNAEKKLQCVNCCYKFMWAENLELHRRLQHAEQFELLNNIQIDETPENTKETLESHQAPKKLLQCPHCDRTYLLQSFLNNHIRDVHIDDNRKKKKKEAERKFLCSLCGIETHTSSNLVIHMRRHTGEKPFKCNECNMGFIRRTELIIHQRRHTGERPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTFCEKTYRYTKDLKLHLLQHTGDTPFECGTCGERFLQNTALEKHRIMRGHFDEAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -