Lmon012391.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010001369.1:714765-728220[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.8e-06 0.00016 22.2 1.3 2 23 66 87 65 87 0.97 2 20 0.00052 0.031 15.0 2.6 1 23 93 115 93 115 0.98 3 20 0.0011 0.063 14.0 1.8 1 23 121 143 121 143 0.95 4 20 1.5e-05 0.00088 19.9 1.5 1 23 149 171 149 171 0.97 5 20 2.9e-06 0.00017 22.1 1.0 1 23 177 199 177 199 0.98 6 20 0.063 3.7 8.5 0.3 1 20 205 224 205 227 0.95 7 20 3.4e-07 2e-05 25.1 0.6 1 23 348 370 348 370 0.97 8 20 0.0001 0.0059 17.3 4.5 1 23 416 438 416 438 0.98 9 20 0.00026 0.015 16.0 3.3 1 23 445 468 445 468 0.97 10 20 8.9e-06 0.00052 20.6 0.2 2 23 605 626 604 626 0.96 11 20 7.3e-05 0.0043 17.7 0.5 1 23 633 656 633 656 0.96 12 20 0.075 4.4 8.2 0.1 1 23 672 694 672 694 0.95 13 20 5.9e-05 0.0035 18.0 0.1 1 23 976 998 976 998 0.95 14 20 0.029 1.7 9.5 2.6 1 20 1032 1051 1032 1054 0.93 15 20 0.048 2.8 8.8 3.9 1 23 1060 1082 1060 1082 0.98 16 20 7.1e-07 4.2e-05 24.0 2.2 1 23 1088 1110 1088 1110 0.99 17 20 0.00065 0.038 14.7 1.0 1 23 1116 1138 1116 1138 0.98 18 20 4.6e-06 0.00027 21.5 4.7 1 23 1178 1200 1178 1200 0.98 19 20 2e-07 1.2e-05 25.8 0.6 1 23 1206 1228 1206 1228 0.99 20 20 0.00085 0.05 14.4 0.3 1 23 1234 1256 1234 1256 0.96
Sequence Information
- Coding Sequence
- ATGGACCTGGAAATGGAAGATGTTAAGAATACTGAAACAGAACTAGTGAATGATCCGATAGCTGAACAGTGTAATAAAATAGATGCGAGCGacaaagatgatgatgatgatgatgatgatgaggaggaGTACGATTCCGATAAGGCGGCAATGGATGATACGCCAAAAGAAACGATTAAACCCAGCGATCAAATTGTGTGCACCGAATGTGGTAAAAGCTTTTCAAGCTATCGTTATCTGAGACGCCATGAAAAGCGACACACCAGCGAACGTCGCTTTGTATGCCCCACTTGTCCACGGAGTTTTACATGTAAATCTGATCTGGTTCACCATGTCGAGACTCACAGCGggctaaagaaatttttatgcgATATTTGCGGCAAAGGATTTGGCAATTCGCATGCAATGAAGACACATAAAAAGTATCATACTAATGTGAAACCGTTTGCATGCGAGCACTGCGACATGAGGTTTGTTCGTGGCGATTCTTTGCGTACCCATATGCGATCTCACACGGGTGAGAAGCCATACAAATGTGTATACTGCGACCGGCCTTTTGCTCAGAGTACCGATCTTAAAAAGCATTTGAAATTGCATCTTGGTGAAGAAGTCTACAATTGCGATTTTTGTTCTCAAGGTTTTCGTTTGGCCACCGAACTGCGAAATCATCTTCCGGCACATAAAAATGAAGATGCTTCTACGAGAGCAAAAAATCTAGCAGAACGACAAGAGAaagagtttaaattaaatttgaagctaTACAGTTTTCCGGTGCAGGCTGAAGGAACCAGAGAAATTGAGCGTTTCAAGAAATCAATGTTAATAGAAACGGAAGAAATGGCAAAAGATCTAATTAAGGTAGAAATTAATGAATCGAAAACCATTGTTGAAGTCGACAAAATTGAACAACCTGACGAGCTTATGGAAACAAACCAGAGTGACGAAGATGACAATTATGTAGTAGAGGAAGAAACAATTGATGCAGCGCCAGAAACACTATCACCTAGAAAATCTTCTGCACGAATCGTGAATCAAAAGAAATTTCCATGCACGGACTGTGGTAAATGTTTTAGTGAAGCATACGGTTTGCGACGACATATGGCTGTTCATAAAAGAGATTCCATTTGTAAAGAAAAGCGTCAACATAGCAAACTGGATACATCTGAAAAAGTAGAGCAGTCTGTCAAAGCAGAGCCATTAAACGAAAAAGAAGAGACAAAACCAACGCCGCCGAAACTTAAGAAACATCAATGTACAGTCTGTGCGAAGTGTTTTCCTAAGGGCTACAATTTGAAGCGGCATATGAAAGTCCATAAATTGGAAAGTCATCCTTACGTATGTAAAGAATGTGGCTGTTGTTATGAGcaaaaggagcaactgaaaTCACACGAAATTACGGAACACAGTTCACCTTTACCTAATATCAACGACGACACCAATTCCAATGATAGCTTATTTGCTGATGATTTGCCAAAGGAGGAAGTACCAGCTGGTTCCGAAACGGAGTTGGCGGGCGAAGCACTAAATTTCGACAAAGTCTTTGATTCGGTCGACATACTTAGTAGTCATAAGCATATTGTGCACGATAACAGAAAACAGAGAAAAAGGAAGACGCGCAAAACGCGTCATACTAAATTGGAGACTTCCGAGGAATCGAATCAGTCTGTCGAATCGGTACCATGCAAAGAAGAATTCCTGTCAGTCGAAATAGACGAATATGAGGTAGAAGAATTGAAATATGAGATAACAGAAGAAACTACGAACATtttaatatcgTCTACACAAGTTGACATTCAAACCAAGATTCCATCACCTTGTACGGTTTGTGGAAAGTCTTTTCCTACTTCGGTCAAAATGAGACGGCACATGGCTGTCCATACAGCTGATAATCGGCCTTACGTGTGTTCGAAATGTGGCTATCGTTTTGTACAGTTGGAAAAACTTAAAGCACATGTAACAAAGGAACATTATACACCTTCAACAAGTATAACGGACTGCACAAATTCCGATGGTTTCTCCTGTGATGAGTGCCAATTTGTTCTTAATAATGCTGATGCATTGGCAATGCATAAAGCGCAACACATTGCACTAGCAGCTACCGAATTGGAGTTGGCAGCTGAAGCACTTAAAATGGTGGAGATGAATGCCAACAATCAAGATTTTATATTTACCTGCCGTTTTTGCATACGATTCGAAATCGACGGCACACATGACTTACTCAAACTTCAGTCCCTATACGATTATCCGGCCGGAGCAATTGGAGTCTTGAGCATTGCCGAAATATTCACGGCAACAACGCCATGGTCGGAAATTAGCCCATCCGATGGACTGCCTCAGGTAACCTGTATGAGCTGCCTGGAAAAATTGCTGGAAGTGCAAAAGTTCCAGGAAATGTGCAAGCAGTCAGAAAACAACCTGCGATGTCTAATTAATGAAAGAACACAAACTAAATCTCTAAACAACAATAATTCATCAACTGAAGCTTCGATGCTGATAGATTCAGTGCTTTTTAAGGAAGATCCCGAAATTTTAGAAGATAAGTGGGCCGAACAAGTAATAACAAACGATCCATTATCAAGCAATTTGTTGgttgacaaacaaataaaaatcgaacCGTTTgtatcaaattcaaaaaataatattttcgagTTGGAAACAATAGATTCGGAGATATCAAACCGTGTTGCagtaaaagacaaaaataatacgGAGTCCATGGATAATGACGCATGGTCCCGAAGGGATCCATTGATGGACGACTTGTCGTTAGAAACATCAGTCAAGGAAAATTCGAATATTATAAATTTCGTAGACGAGGATATTAAACCGACTGTCGTTGTTGAGAGTAGTGATATAGAAGatgaaataacaaaacaaactcTAAATCCacTCTTAGCATCAAGGCTATATGAAAATCAAACGCCATATTTGTGTAAGGAGTGCGGAGAGTCATTTGACACCGCCACTGCATTGAGAGATCATCAATTGGAACACAGCGAAGAAGAGCGTTTTGACTGTAAATCTTGTTCCAAGTGGTTTCTGTGCTCTACTGATCTTGCTGAGCATATTTTAACTCACCGTGGGGAAAAGAAACATGTCTGCGCCATTTGTAGCGCGGCTTTTAAACATCCATCTGGACTGAGTAGACACAAACTGTGTCACAGTCAAGAGAGACCGCACAAGTGTGACCATTGTGAAATGCGttTCAACATTGTAACGAATAAGATTATTCATATGCGaacacacactggtgaaaagccttacaaatgtaaatactgtGAGATGACTTTCGCACGAAGTTCCTCTCTCACCCAGCATCTTCAAACGCATCTTGGTGAAGAGATATACAAATGTGATCTCTGTCCATTTGGTTTTCGGTTGGCAGCCGAACTGCGAAGACATCATaaagaacataaaaatgaaGATGCTGATACACGAGCAAGAAATATAGCTGCACGACAAGAGAAAGATGCCAACACTGACCCTTACAATATGAAGAAGCGTGCAAGACAccagaaaaaggaaaaaacgcATAAGTGTGAGCATTGTGACAAGTTTTTCGATCTACCCGAAAATTTGCGCCGCCATTTGCGAACACATACTGGTGAGAAACCTTACCAATGTAAATACTGTGAGCGGGCATTTGCTCAAAGTGCCAATCTTATCAAGCACCTCCGATCACATCTTGGGGATGAAGTTTACAATTGTGATCTTTGTCCGCGAGGTTTCGGGTTGTCATCCGATTTGCGCAAACACTATATGGATCATAAAAATGATGATGTCGATACACGAAAAAGAAATCTAGTTGCCCGACAAGAGAAAGACGCCAAACTGCAGATGAAGTTGGCCAATTTACCAGCCAAAGTTGATGGTACTGATAGCTCCtga
- Protein Sequence
- MDLEMEDVKNTETELVNDPIAEQCNKIDASDKDDDDDDDDEEEYDSDKAAMDDTPKETIKPSDQIVCTECGKSFSSYRYLRRHEKRHTSERRFVCPTCPRSFTCKSDLVHHVETHSGLKKFLCDICGKGFGNSHAMKTHKKYHTNVKPFACEHCDMRFVRGDSLRTHMRSHTGEKPYKCVYCDRPFAQSTDLKKHLKLHLGEEVYNCDFCSQGFRLATELRNHLPAHKNEDASTRAKNLAERQEKEFKLNLKLYSFPVQAEGTREIERFKKSMLIETEEMAKDLIKVEINESKTIVEVDKIEQPDELMETNQSDEDDNYVVEEETIDAAPETLSPRKSSARIVNQKKFPCTDCGKCFSEAYGLRRHMAVHKRDSICKEKRQHSKLDTSEKVEQSVKAEPLNEKEETKPTPPKLKKHQCTVCAKCFPKGYNLKRHMKVHKLESHPYVCKECGCCYEQKEQLKSHEITEHSSPLPNINDDTNSNDSLFADDLPKEEVPAGSETELAGEALNFDKVFDSVDILSSHKHIVHDNRKQRKRKTRKTRHTKLETSEESNQSVESVPCKEEFLSVEIDEYEVEELKYEITEETTNILISSTQVDIQTKIPSPCTVCGKSFPTSVKMRRHMAVHTADNRPYVCSKCGYRFVQLEKLKAHVTKEHYTPSTSITDCTNSDGFSCDECQFVLNNADALAMHKAQHIALAATELELAAEALKMVEMNANNQDFIFTCRFCIRFEIDGTHDLLKLQSLYDYPAGAIGVLSIAEIFTATTPWSEISPSDGLPQVTCMSCLEKLLEVQKFQEMCKQSENNLRCLINERTQTKSLNNNNSSTEASMLIDSVLFKEDPEILEDKWAEQVITNDPLSSNLLVDKQIKIEPFVSNSKNNIFELETIDSEISNRVAVKDKNNTESMDNDAWSRRDPLMDDLSLETSVKENSNIINFVDEDIKPTVVVESSDIEDEITKQTLNPLLASRLYENQTPYLCKECGESFDTATALRDHQLEHSEEERFDCKSCSKWFLCSTDLAEHILTHRGEKKHVCAICSAAFKHPSGLSRHKLCHSQERPHKCDHCEMRFNIVTNKIIHMRTHTGEKPYKCKYCEMTFARSSSLTQHLQTHLGEEIYKCDLCPFGFRLAAELRRHHKEHKNEDADTRARNIAARQEKDANTDPYNMKKRARHQKKEKTHKCEHCDKFFDLPENLRRHLRTHTGEKPYQCKYCERAFAQSANLIKHLRSHLGDEVYNCDLCPRGFGLSSDLRKHYMDHKNDDVDTRKRNLVARQEKDAKLQMKLANLPAKVDGTDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -