Basic Information

Gene Symbol
stc
Assembly
GCA_035044805.1
Location
JAWNNP010000641.1:22886-30931[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 2.2e+04 -4.4 1.6 15 19 584 588 583 588 0.81
2 15 0.057 6.4e+02 0.8 2.2 4 11 617 624 616 625 0.91
3 15 1.3e-06 0.014 15.7 15.6 3 19 630 646 629 646 0.94
4 15 7.8e-07 0.0087 16.4 13.4 3 18 684 699 682 700 0.91
5 15 1.5 1.7e+04 -3.7 0.6 7 11 704 708 704 708 0.87
6 15 1.7 2e+04 -3.9 0.9 6 10 730 734 729 734 0.83
7 15 3.2e-07 0.0036 17.6 17.2 1 19 740 758 740 758 0.98
8 15 0.48 5.4e+03 -2.1 0.9 5 10 788 793 788 793 0.95
9 15 2.4e-05 0.27 11.6 15.7 4 18 806 820 799 821 0.86
10 15 0.035 4e+02 1.5 11.5 1 11 861 871 861 882 0.94
11 15 5.7e-10 6.4e-06 26.4 15.5 1 18 888 905 888 906 0.97
12 15 0.9 1e+04 -3.0 12.1 9 18 952 962 942 963 0.81
13 15 2.4e-07 0.0026 18.0 14.7 1 17 999 1015 999 1024 0.93
14 15 4e-07 0.0045 17.3 16.3 1 19 1031 1050 1031 1050 0.97
15 15 0.48 5.4e+03 -2.1 0.7 7 12 1065 1070 1059 1070 0.72

Sequence Information

Coding Sequence
ATGGCGCGTCTAAACTGGATGCTGTGTAGTAGGTCCAAGCTGCCCCTGAGATGTAAATGGGCGATTTACAAGGCTATTGTTGTGCGCACCTGGAGCTATGGGATACAGATTTGGGGATTGGCTGCAGCGACGAATCGTAAGCGCATACAGACGCTTCAGAATAAAGCCTTGCGGCTTATCACGGATTGTGCCTGCCAGGGCAGCGTTGGCAAAAAAGTACCTGAACTGAGCACAAGCCACGCATATTTGCGGCCGCTGGGCTGCCAAATAGCAGCCGTAGACGCTACGTGCAAACAACAAAGCAGCAGCGCATTAGTAAAAGTGCAAACGTCTGCAAATATGTCGGATCTATGGCAAAGCGCCGGCGAAACGGCCACAACAGGCATTGGTGGCGCTGCGAACAGAAATGATTTGCAGTCAAATAATGGCTTAACTGCGCGTGATtcgtataatttttcaaatgataTCGGcggcggcaacagcaacaacaactacgttGACTTTAATCAGTTCATATTACAACATAATTTGATCGGAAACAATGCTGAGGGCTGCGCAGCACCGCATACAATGCAGCACCCACTTGCTGCAGACTATAGTCAAAGCCAAGCTGCTGCAGCACACAATAATGCTTATGTGAACAACTTTGCAAATGGAGACAGCAGCAAGCCGGCGTCAGTAACAACGAATCAATCATTTGATAGcCTCTTTTCTAatccaaacatttttcaatacaaCAACGGTGCCGTTGGCAACGGCGGTAGCATTGACGGCACTAGTTCGCTTGGCAGCGGCACAACTTATTACAACAATTATTATACGCCTTTTGAGAATATAGGCGGCGTCAACTTTTTTGCCAATCCATTTGCCACAGGTTTTGATCTTAATACGAATTTACAGGCCGATGCGCCAGAGTTTGTACCAAATTTTGCCAAGTTAAATTTGAGTGAATCCACCATATCGGAAGCAGAAACTAATGCCAGCACAACGCAGCCGAAAATGAATTCAACAGTTAATGGtaatgaagcagcagcaagtcCTTCAACGCCCAATACTTCACGCCAGTCGTTGCTTTCCAATGGCAATAATGGCAGTACCGGCAGCAACCACAGCATTACGCCAAATAGATTTAGGCCAACAAATGAGTCACACACAACGAACTCAACGCATCCAAACAACAATAGCACTGGTGCTACTAGCAAACAAAACTATCGCACAGCACACAATTATACGCCGGGGGAGCGCGAACAGCGTACGTTTACGaatggtggcggcggcggtggtggtggtggtggtggtagaCAACGTGGCGGTGGCGCTGGCCGTCGCAACACGGACTATCGTGAGGATCGTGAAGATCGTTACGGCGATCGTTTTGAAAAGAAGCCGCAGAAGCAGCAGCGCTATGACAATCATCGTAGCAACAAACGTCGCGACGACTGGAATCGTAATCGCGATCGTATTAATGGCTTTCGCGTCGATGATCTTGATAACAGCAACGAGAGTCCGCTGCATTCGCCCGATAAGAAGTCTTCACCTTCAAAGAAAAACTACGTCGAAAATGAGAAACTTTCACAGCGTGAGAAGCTAATACGCGATATTGAAATACGTCGGTTGGAGTGCCTAGTTTGCGTAGAGCTCATTAAATCGCATCATGGCGTCTGGTCATGCCACAATTGCTATCACATAATGCATCTAAAGTGTATTATAACCTGGGCTTCATCGTCGAAATCGGAAGAGGGCTGGCGTTGTCCCGCCTGTCAGAATGTTGCCAAGGAAGTGCCACGCGACTATTACTGTTTCTGTGGCAAACAGAAGAATCCATTAGGCAATCGCCAAGAGTTGGCGCATTCTTGCGGCGAGGTTTGTTGTCGCATCGAAGGCTGCCAGCATGCGTGCACATTGCTCTGTCATCCAGGTCCTTGTCCACCGTGCCAGGCGAATGTGCAGCGCAGCTGTGGTTGCGGCAAGACAACCAAAACGATGCAGTGCGCCATGAAAACTTTAATCGAATGCGGTGATACCTGCGATAAGTTGTTGAACTGTGAAGTACACAGATGCAAAGAGAAATGCCACGAGGGCAAGTGTCCGTCGTGCGAGGAAAAGGTCGAACAAAAATGTCACTGTGCCAAGCAGGAGCGTCAGGTTGTCTGTACGCGTGAAACTCGTGACAAGCATTTGTACTCCTGCAGCAAGCCGTGTGGTCGCGATTTGGCTTGTGGCAATCACAAGTGTAAGGATTGTTGTCATGCCGGCGAATGTCGTACGTGCCGCATAAGTCCGGCTGTGGTCACTTCTTGTCCATGCGGTAAGATGCCTGTCTTGCCAGGACAGCGCAAATCATGTCTCGATGCTATACCAACATGCGAGAGCATCTGCAGCAAAACGCTACGTTGCGGCAAGCCCGCACATCCGCATCAGTGCACCAGCAAATGTCATCTGGGCAACTGTCCACCGTGCAACAAACAGACCGCAATTAAATGTCGCTGCGGGCACATGGATCAGATGATCAAGTGTCGACAGCTGTCAACGCGCGCTGATGATGCACGCTGCAAGAAACGCTGCACCAAGAAACGTTCGTGCGGCAAGCATAAATGCAATCAGGAGTGTTGCATCGATATCGATCACATCTGTCCGCTGCCATGCAACTATACGCTGTCCTGCGGCAAACACAAATGCGATCAACCCTGTCATCGCGGCAACTGTCCGCCATGCTATCGCTCTTCATTCGAAGAGCTCTACTGCGAATGTGGCGCTGAAGTTATAATGCCACCAGTGCCATGTGGCACAAAGCGTCCACACTGCACGAAGACCTGTTCGCGTGCGCATCCTTGTGAACATTTACCACAACACAACTGCCACTCAGGGCCGTCATGTCCACCATGctttatatttacaacaaaatggtGCTTCGGGCATCATGAACAGCGCAAAACCATTCCATGCTCGCAGGAAAGCTTCAGCTGCGGTTTCGCCTGCAACAAGCCACTGCCATGTGGACGGCATAAATGCATTAAACCGTGTCATGAGGGTGCCTGCCAGACGCCAGGAGAAATATGCAAGCAGAGCTGCACAACGCTGCGCGCACAGTGCGGTCACAAATGTCAGACACCGTGCCACGAAGGCAACTGCCCGGATACGCCGTGCAAAGAGATGGTTGAAGTACAATGCGAATGCGGCAATCGCAAACAGAATCGTACATGCCATGAGCTTGTACGTGAGTACAGTCGCATAGCTACCGCACAATTGGCCTCTTCAATGGCTGAGATGCAGCGCGGCAATCATATGGAACTGAGCGAAATACTGGCACCTGTCAAGCTCAATAAGACTAATAAAACACTCGACTGCAATGAGGAATGCCGTCTACTCGAACGTAATAGTCGTCTAGCCGTTGCACTACAGATACGTAATCCCGATGCACAACAGCGTCAGATGACCAAATATTCCGAATTTGTGCGCAACTTTGCCAAACGCAATGCAACATTGGTGAAATCGGTCTACGATACGCTAACAAATCTCGTTAAGTTGGCCAAGGAGAGCAAACAGAAATCGCGTAGCCACTCATTTCCCACCATGAATCGCGAGAAACGGCAGCTGGTGCATGAGCTGTGTGAGGCCTTCAATGTGGAGTCTGTGTCGTACGATCATGAGCCAAATCGTAATGTGGTGGCTACAGCGCATAGAGAGAAGgcATGGCTACCAGCCACCAGCATTATGGAGGTTATACAGCGCGAGTCTGGACAACGTCGTGTGCCTGTACCTAGCAACAACGCCTGGGGTCTTAAAAAGTAG
Protein Sequence
MARLNWMLCSRSKLPLRCKWAIYKAIVVRTWSYGIQIWGLAAATNRKRIQTLQNKALRLITDCACQGSVGKKVPELSTSHAYLRPLGCQIAAVDATCKQQSSSALVKVQTSANMSDLWQSAGETATTGIGGAANRNDLQSNNGLTARDSYNFSNDIGGGNSNNNYVDFNQFILQHNLIGNNAEGCAAPHTMQHPLAADYSQSQAAAAHNNAYVNNFANGDSSKPASVTTNQSFDSLFSNPNIFQYNNGAVGNGGSIDGTSSLGSGTTYYNNYYTPFENIGGVNFFANPFATGFDLNTNLQADAPEFVPNFAKLNLSESTISEAETNASTTQPKMNSTVNGNEAAASPSTPNTSRQSLLSNGNNGSTGSNHSITPNRFRPTNESHTTNSTHPNNNSTGATSKQNYRTAHNYTPGEREQRTFTNGGGGGGGGGGGRQRGGGAGRRNTDYREDREDRYGDRFEKKPQKQQRYDNHRSNKRRDDWNRNRDRINGFRVDDLDNSNESPLHSPDKKSSPSKKNYVENEKLSQREKLIRDIEIRRLECLVCVELIKSHHGVWSCHNCYHIMHLKCIITWASSSKSEEGWRCPACQNVAKEVPRDYYCFCGKQKNPLGNRQELAHSCGEVCCRIEGCQHACTLLCHPGPCPPCQANVQRSCGCGKTTKTMQCAMKTLIECGDTCDKLLNCEVHRCKEKCHEGKCPSCEEKVEQKCHCAKQERQVVCTRETRDKHLYSCSKPCGRDLACGNHKCKDCCHAGECRTCRISPAVVTSCPCGKMPVLPGQRKSCLDAIPTCESICSKTLRCGKPAHPHQCTSKCHLGNCPPCNKQTAIKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIMPPVPCGTKRPHCTKTCSRAHPCEHLPQHNCHSGPSCPPCFIFTTKWCFGHHEQRKTIPCSQESFSCGFACNKPLPCGRHKCIKPCHEGACQTPGEICKQSCTTLRAQCGHKCQTPCHEGNCPDTPCKEMVEVQCECGNRKQNRTCHELVREYSRIATAQLASSMAEMQRGNHMELSEILAPVKLNKTNKTLDCNEECRLLERNSRLAVALQIRNPDAQQRQMTKYSEFVRNFAKRNATLVKSVYDTLTNLVKLAKESKQKSRSHSFPTMNREKRQLVHELCEAFNVESVSYDHEPNRNVVATAHREKAWLPATSIMEVIQRESGQRRVPVPSNNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00891535; iTF_00892384;
90% Identity
-
80% Identity
-