Lmac011110.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- -
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010002066.1:8467-33321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 97 4.0 3.2 3 23 309 331 309 331 0.94 2 14 0.27 17 6.5 1.4 1 22 478 499 478 502 0.90 3 14 0.18 11 7.0 0.2 2 23 524 546 523 546 0.91 4 14 6.1 3.8e+02 2.2 1.2 3 23 564 585 562 585 0.86 5 14 0.68 42 5.2 1.7 1 23 590 614 590 614 0.89 6 14 0.21 13 6.8 0.1 1 21 728 748 728 749 0.94 7 14 2.7 1.7e+02 3.3 2.2 2 19 773 790 772 794 0.90 8 14 0.3 18 6.3 5.7 2 23 806 826 805 826 0.95 9 14 1.7e-06 0.00011 22.8 0.6 1 23 832 855 832 855 0.91 10 14 0.00098 0.06 14.1 0.4 2 23 882 903 881 903 0.96 11 14 0.94 58 4.7 0.5 1 23 910 934 910 934 0.96 12 14 1.5 94 4.1 2.3 1 23 939 963 939 963 0.97 13 14 0.001 0.062 14.1 0.1 1 23 971 993 971 993 0.97 14 14 0.00089 0.055 14.3 4.5 1 21 999 1019 999 1020 0.95
Sequence Information
- Coding Sequence
- ATGATTGAATCCGAAGATTTGGATGATGCACATCTCTGCATCAAATGTAATTCGAAGATTATTGGCATTGAGCAATATATTGCACATCGTAAAACAAATTGCAGTATGGGAAATAACAGAAACACTGCATCCCTGGAAACAGTAACAACTTCGGAAGCAGCGACTCCAACAAATCTGCCGAATACAAACATATCACCGCCAACAACAATTAGTGCCAGTAATTTACACGATCAAAGCTATGAAAATTGTCCATTCGCTGAACCAGAAGCACCCTCCAGTTATGCAAATAAAGCCTCACATGGTGGCAAATCTTCAAAACATCTCAGCTATGGCTACAGCGATTTACACTGTGATTTGGCTGCCGATGAGTTCTTCTCCTCGCTGGAATTGCAAAGTGTACAAGCGACCGGAATTTCAATGAGCGGTAAGACGAGCAGCGCACTGCGACATCGTACACAAACGGAAGCTTGGCTGCATTCACATGAAACGCTCGAAAAAGCGGTACGCGATATGAGCGAAGCCAAAAAGCACTATGAGGGCgaatttaagcaaatttcaCAAATGGTCACTTATGCCACAAGTGATGAAGAAGAACTGGAGGATGAATTCGAAGATGATTTTGATGATAGTCTTGATGATGTAGACTATGATCCGCGCGTAGATATGGGCATGCGTCACTCACCGCCTACAGTACCACTCACGCATACCGGTGGTAAGTGGCCACCGGCGGAATTTCGTCCAAATTTATTGGCCACACAAATGTCACGTATATCGCCGAATTGGGATGAGCATGCGGATGATTTGGATAACGCAGTAGCACAGCATCCACCAGCTGAGCATACGAAAGGTAAATGGGTGCCGGGCAGTAAGTTGCAGCGCTTAGAGTATCGTGAAAATGTTGATGTAACACAGAAAAGTCTTTGGTGTAATATTTGTTGCCGCAAGCTAAAGAATCGCGCAAACTATGCACAACATTTGCGTACAAGTTATCACCAGAAACGTAGCGAAACGGAACAACAATTGGAGAAGGCAACATTTGAACCGATACGCACGCGTAGTTCGCCACTGAAAAGTATTGTGGAACCTCCTCAAACTCCAACTCAAACTGAAACTGCTGAAGCAGCACCACGCAGACGCAAAAAGCGAAAGCGTCGCGCGGTCTATTTCAAGTGTGAAGTCTGTAAACTTGCCATATTGCGTCAACAGATTGGCAAACATCTAATCTCGCACTATCACTATCGACGCATGCAGTCAGCAGACGAAGCCTCCGCCGATGCCGCCTTGCATGTGATACTTGAGAATATGCACGCCATAGTCCTGCAATCGCCATTCCAATGTCTGCCTTGCGCCTACTACGCCAATACAGAGGAAAATTTTCTAGAGCATTGGTCTACAGTGGAGCACTGCATACGCGTCGAATACGCTGGAGAATTTTACTGCAGTTACTGCAGATTTGAGTGTGTGACGAATGCGCAGATGTTAGACCATCTGCAGTCCGCCGAACACAAAAACTTGATACGCGCGCTTGGTCGTTCCATGCCGATTTGCATAGGCAAACGACGTAATATCAAGTGCAACATTTGCCGGCAGGTTTTTCTTTATAACATGGAACTGCGGCAACATTTTGCCGTAGCGCACGATATTGCACCTGAGGGTACCGCTTCGGATGCCTACCAAAGTCGTTTTCTGTGCGGTTTATGTGGCGATCCACATCGTTCACGCGTTGCGCTGCAACGTCATCAGAAGTTTAAGCATAGCGTGGCCAAGTTCCACTGCGGCGTTTGTAAACTGGAGTTCAGCACAACACTGTTGGCGCGACGTCACCGCAAGTCGATGGAACACAAGCGAAAGGCAGCTGAAACCAAGAAATATAGAAAAGCTAAAGTTAAGCATACAACTGTAACCAGCTCCGAAATACTGAAACTAACTAAACCCATTGAAAGTGCAACAGACCAAGTTGAAGCAGCAGCTGAGCTAAGCAAAGCAGAAGATGAGGTGGAACCTATGGTGGAGCAAATGTTACAAGAAGTTTTAGCGGAGGACAACAACGAAGCGATTGATGTACAGCCAATGGAGACGCACATTTTAATGGAACGCAATAGCGAAAGAGCTCTAACACCACCAGCAACTGCAACGCCAGAAGTAACAGAAACCAATGCGGAGCAACCGAAGTCAGATACGCACGAATGCATGTTGTGCAATTTATCTTTTGCCACCGGACAAGCTTTGGGCAGACATGTGCGCGGCTGTAAACCAGTTGCATCTACCTCAGCAGCAGCTGCGCATATACCGGAGGCAACAAAGGATTCTTGCTGGCAGTGTAAAGAGTGCAGCTTTAAGACTAGCTTTGAATCCGATTTGATCTATCATTGccttttgcataaaaatggcGCAGCGACGCGCAAACAGCTACTGCAGTGTCCTTTGTGTCCAAAGTATTTTCGCAAGCATTCATTGCGTTGCCATCTACGACAACATACCAATGAGAAAATCTTCGAATGcgaaaaatgtaacaaaaaatttgcacGAAGAAGTAATTTGAAGAATCATGTTGCGGCGGTGCACAATGAAAATGCCAAATTGGTGCCCAAGGAACGTAAAATACGTGGAAAAATAAGGAAGAAGAAACCCGAGCCAATGCTCTCATGTACTGTTTGCGCAAAAAAGTTGGCTTCAAAATTCAATCTCAAATTGCACATGATGATACACACACAGATAGGACTTAAATTTCCTTGCAATCAGAAGGATTGCAAATATGCCGCACCTACACGGCACATTTTAAAAGTTCATATGGCATCGCATTCACAGCAAAGCTTCAAGTGCGATTATGGAAGATGCTCGTATGTGGGACGGAGTGAATTGCATCTGGCAAGGCATAAGAAATATCATGAATCGACACGTCCCATGTCCTATGCTTGTGATCAATGTGACTACAAAGCGCCACTGCCAAGTAATCTGAAGCGTCATGTAATGCGTCACACTAATGAGAAACCACATAAGTGCCCATACTGCGAATTCTCTTGCAATAGTCGCGATAATCTACGCAAACATATACTGCATACGGGTAAACATCCGGGAAAGTTCATTTACGTGTGTGAAGAATGCATCAAGGCGAAAGCTAAGGAGCCATACCAGACGAACAGTTTTATGGAGCATCAACGTCACATGGCAAAGGAACATTATATgtga
- Protein Sequence
- MIESEDLDDAHLCIKCNSKIIGIEQYIAHRKTNCSMGNNRNTASLETVTTSEAATPTNLPNTNISPPTTISASNLHDQSYENCPFAEPEAPSSYANKASHGGKSSKHLSYGYSDLHCDLAADEFFSSLELQSVQATGISMSGKTSSALRHRTQTEAWLHSHETLEKAVRDMSEAKKHYEGEFKQISQMVTYATSDEEELEDEFEDDFDDSLDDVDYDPRVDMGMRHSPPTVPLTHTGGKWPPAEFRPNLLATQMSRISPNWDEHADDLDNAVAQHPPAEHTKGKWVPGSKLQRLEYRENVDVTQKSLWCNICCRKLKNRANYAQHLRTSYHQKRSETEQQLEKATFEPIRTRSSPLKSIVEPPQTPTQTETAEAAPRRRKKRKRRAVYFKCEVCKLAILRQQIGKHLISHYHYRRMQSADEASADAALHVILENMHAIVLQSPFQCLPCAYYANTEENFLEHWSTVEHCIRVEYAGEFYCSYCRFECVTNAQMLDHLQSAEHKNLIRALGRSMPICIGKRRNIKCNICRQVFLYNMELRQHFAVAHDIAPEGTASDAYQSRFLCGLCGDPHRSRVALQRHQKFKHSVAKFHCGVCKLEFSTTLLARRHRKSMEHKRKAAETKKYRKAKVKHTTVTSSEILKLTKPIESATDQVEAAAELSKAEDEVEPMVEQMLQEVLAEDNNEAIDVQPMETHILMERNSERALTPPATATPEVTETNAEQPKSDTHECMLCNLSFATGQALGRHVRGCKPVASTSAAAAHIPEATKDSCWQCKECSFKTSFESDLIYHCLLHKNGAATRKQLLQCPLCPKYFRKHSLRCHLRQHTNEKIFECEKCNKKFARRSNLKNHVAAVHNENAKLVPKERKIRGKIRKKKPEPMLSCTVCAKKLASKFNLKLHMMIHTQIGLKFPCNQKDCKYAAPTRHILKVHMASHSQQSFKCDYGRCSYVGRSELHLARHKKYHESTRPMSYACDQCDYKAPLPSNLKRHVMRHTNEKPHKCPYCEFSCNSRDNLRKHILHTGKHPGKFIYVCEECIKAKAKEPYQTNSFMEHQRHMAKEHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -