Basic Information

Insect: Leucophenga maculata
Gene Symbol: -
Assembly: GCA_035044805.1
Location: JAWNNP010002956.1:2358503-2360554[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.015 0.93 10.4 0.4 1 23 226 248 226 248 0.98

2 9 0.00061 0.038 14.8 3.6 1 21 254 274 254 276 0.94

3 9 0.00035 0.021 15.5 5.9 1 23 282 304 282 304 0.98

4 9 1e-06 6.5e-05 23.5 2.1 1 23 310 332 310 332 0.99

5 9 1.1 68 4.5 0.1 1 20 338 357 338 360 0.93

6 9 8 4.9e+02 1.8 0.6 1 8 416 423 416 424 0.89

7 9 4.5e-06 0.00028 21.5 1.6 1 23 435 457 435 457 0.99

8 9 2.5e-05 0.0016 19.1 1.1 1 23 463 485 463 485 0.99

9 9 0.0096 0.59 11.0 1.4 1 19 491 509 491 513 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.015	0.93	10.4	0.4	1	23	226	248	226	248	0.98
2	9	0.00061	0.038	14.8	3.6	1	21	254	274	254	276	0.94
3	9	0.00035	0.021	15.5	5.9	1	23	282	304	282	304	0.98
4	9	1e-06	6.5e-05	23.5	2.1	1	23	310	332	310	332	0.99
5	9	1.1	68	4.5	0.1	1	20	338	357	338	360	0.93
6	9	8	4.9e+02	1.8	0.6	1	8	416	423	416	424	0.89
7	9	4.5e-06	0.00028	21.5	1.6	1	23	435	457	435	457	0.99
8	9	2.5e-05	0.0016	19.1	1.1	1	23	463	485	463	485	0.99
9	9	0.0096	0.59	11.0	1.4	1	19	491	509	491	513	0.94

Sequence Information

Coding Sequence: ATGTTGAAAATGCTTACGTCCAATCGTGATTTCTCCTATACCTGCCGCTGTTGTATACAACGTGAAACAGACGACACACAAGATACGCTGAGACTACAATCGTTGTACGATTGTCCGACAGGATCGATTAGTTTCATGAGCATTGCAGAGATATTTGCAATGACAACGCCTCGTATAGTAATTAGTCCTACAGATGGAATGCCTCAAGTAATATGTATAAATTGCGTTGAAAAATtgatacaaatgcaaaagttctTGGATATGTGTATAGACTCGGAGAGAAACATGCGATGCCTTATGGAAGATGATAATCCTAACCAATCTGTAGAACCTTCTGAAACAACTGTTAAGGAAGAGTTGGAGATTCAAGAAGAACAAGAGGTACAGGATTGGATGgctataaaaattgaaaataatgaacTTAAAAACGAACCAATGAATCAACAAACTATGACTGATGATGACATTGTTTTTAATGCAGAAGAGTGTAATACAGATCCGCACACATCACATATTTGCTCGGAAATGAAAGTTACCCATGAACCCTTGACTGATGATGATTGTTTGTTGGAGACACTAGCTACAATAAACTCGAACGAATTGAGTTTTATTGGAAATGACAGTGTATCGACAACTGATGATAGTAATGATGCAAAACAGACCACAAACCTACGGTTTGAGTGTCCCATTTGtccaaattattatttgacACGACAAAAACTGAATCAGCATATGATCTCGCATAGTAATGTGAAGAAATTTGTTTGCGAAATATGTAACAAAGCATTTAGAACAGGATCACATTTGGTTAGTCATAAAAAGTGTCACAGCGAAGAGAAACCACATAAGTGTGAACAATGTGATATGCGCTTTCGTTTCGCTACAAATAAGCGTAAACACATGCGTAAACATACGGGTGAAAAGCCGTACGTATGTAAGCATTGTGAACGCGCTTTTGCAAATAGGTCCACACTAAACAGTCATCTCCAAACACATCTTGGCAAAGAAATCTATAACTGTGATCTTTGTCCAAGTGCTTTTCAATTGGCAATCGAACTCCGAAATCATTATCCTCAACACAAAGCTGAGGATGCTGAAACCAGAGCAAGAAATCTAGCTGCAAGGCAAGAAAAAGACGCCGAGCAGGAGCAACAGTTAAAGACAAAAGGCTTTACCGACAGTgccaaattaacaacaagaatTAATACGTATGAAAACAATCATGAGGATATTGCAAACAAACCATACAAGTGTGATTTATGCGGCATGCGACACATGCGAAAACATACCGGCGAGAAGCCATTTAAGTGTGATTTATGCGACATAAGTTATGCTGAAAGACAACATTTGCGTGTGCACATGCGTACGCACACTGGTGAGAAGCCATACAAGTGCAAATATTGTGCGTACACTGCCATTGAAAGCTCCAATTTAAACAGGCATATACGCAAGCATCTTGGCGATGAAATCTACAACTGCGAACTTTGTCCTCGCAACTTTCGGTTTGCCATTGAACTCCGAAAACACTGTGCGGAACACAAAACTGATGATACTGAGACCAGCAAGAGAAATCTGGTTGCAAGACATGAAAAAGATGCTCAACTAAAGTTACATTTGTTAACAACGGCTAAGAATactgatattgaaaaaatacaaaaggaatag
Protein Sequence: MLKMLTSNRDFSYTCRCCIQRETDDTQDTLRLQSLYDCPTGSISFMSIAEIFAMTTPRIVISPTDGMPQVICINCVEKLIQMQKFLDMCIDSERNMRCLMEDDNPNQSVEPSETTVKEELEIQEEQEVQDWMAIKIENNELKNEPMNQQTMTDDDIVFNAEECNTDPHTSHICSEMKVTHEPLTDDDCLLETLATINSNELSFIGNDSVSTTDDSNDAKQTTNLRFECPICPNYYLTRQKLNQHMISHSNVKKFVCEICNKAFRTGSHLVSHKKCHSEEKPHKCEQCDMRFRFATNKRKHMRKHTGEKPYVCKHCERAFANRSTLNSHLQTHLGKEIYNCDLCPSAFQLAIELRNHYPQHKAEDAETRARNLAARQEKDAEQEQQLKTKGFTDSAKLTTRINTYENNHEDIANKPYKCDLCGMRHMRKHTGEKPFKCDLCDISYAERQHLRVHMRTHTGEKPYKCKYCAYTAIESSNLNRHIRKHLGDEIYNCELCPRNFRFAIELRKHCAEHKTDDTETSKRNLVARHEKDAQLKLHLLTTAKNTDIEKIQKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -