Lmac012307.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- -
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010002290.1:1007859-1012860[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.12 13.1 0.5 1 23 149 171 149 171 0.98 2 13 0.71 44 5.1 1.1 1 23 177 200 177 200 0.96 3 13 0.0057 0.36 11.7 0.6 2 23 450 471 449 471 0.97 4 13 0.31 19 6.3 1.0 1 23 521 544 521 544 0.95 5 13 0.083 5.1 8.1 0.2 2 23 583 604 582 604 0.96 6 13 0.047 2.9 8.8 6.2 5 23 867 885 864 885 0.92 7 13 0.0089 0.55 11.1 0.7 1 23 891 914 891 914 0.96 8 13 0.0022 0.14 13.0 1.6 1 23 982 1005 982 1005 0.97 9 13 0.0057 0.35 11.7 1.1 1 23 1195 1217 1195 1217 0.99 10 13 8.4e-06 0.00052 20.6 0.7 1 23 1222 1244 1222 1244 0.98 11 13 0.00048 0.029 15.1 4.5 1 23 1250 1275 1250 1275 0.93 12 13 0.00011 0.0071 17.1 0.4 1 23 1280 1304 1280 1304 0.98 13 13 2e-05 0.0012 19.5 2.7 1 23 1311 1334 1311 1334 0.96
Sequence Information
- Coding Sequence
- ATGGCAATAAGTGGTGAAGCAATAGACTTCAAGCTCTGCTGTCGTTGTTGCTTGAAGTCAGACGAGGATTTCTACAAATTAGACGCGTTTATGGTGGGCGATATAAACAATGAAGACATTAGTTTACTACAGTGTTTAGTGCGCACAATAAACCAGGAAGATATTCCTGAGCTGCCCAAATACATCTGCGATACATGTACTAAAATGCTGCATATATCAcacaattttgtacaaaatgcgTTGATTGCGCATGAAGTGCTCCGACACAAATTATGCCCTGCGAAGTGCGAGGGCGCCGCGCAAGCAGAGAATGTGGAAATGCGTTGGCCACCGAATGGGaaaaacatacacaaaagcGCGATAGCAACGCAGACGGCAACCGAATTGGAAATCAAAAAGGATGCGGATGTCAACACGTCACCACTATCGAGTGAACCTTTGCGTTTTCAATGTAAGGTCTGTGGTGAAGGTATGCACACGAGAGATGCATTAAAAGAGCATATACGCTTGCATTTAGatctAATCACGTACAGTTGTCAAATGTGTAATTATGACACACGTGTACGAAGTAAAATAATGCTACATTATACTACAGTACATCGCACGCAGCCCACACCACAACAGCTTCAGCTGAGACCATTTACGAAAGTAAAACATGAACCTTTGAGTGAAGCTACTAATGCAACAACCGTAAGTCATACATGCACTACAGAAGATCTTGAGCTACTGATACCAGCCGCAATGACAGCGCAAGAGTTGACTCAGCAGCATGCATTAGATAAAGCTAACAATCTTCGACAATTAACGAAATGTAGCATCAGTAATCAAGAAACTTATCAGCAAAGAAATGCAGCGAAAGTACGGAAGTTAGGCGACGATGTTATAAATATGCACAGCGATACACAACAAACGACACTGCCAACAGTGCTTGCTAAAGCAACTGATGATGTCAGCGCACTGGAGCAAACACTACCATCGGATTTCGATATAAGCACACTTGGTCTGACCAGCGATATAGTAAACGTGGCCAGTGAATTCGTAGTCATGCCTGATGGCAGTCTAgagcaaaaaatcgaaaatgGTGTTATTATACAATACATTAATGCTGCCGAGCCAGCGGTGCAGGATAATATATTAGACAACAATGGTTTCGAATTAGCTCAAATGATGGAAATTGATGATATTATTGTAGAGGAAGAGGAGTCAATTGAACAGCAGAGTTTAGAACATAAAAATACTGTAACAACGAACATTGAAATGCCGCAAACAACTAAAAGACAAACTGCATCAACTACGACAGCTGAAGCAAAGGAGCGCTTGCAATTAAGTATAATGCGCAAACAACAAAGATGTACAGTTTGCACGAAGATATTCTTATCGCCCAATCGCCTACGGGCGCATATGCTGACACACAAGAaTGTACCCAAGTACCATTGCGACATGTGTAACTTCTTTACGCTTTTAAGCGCGGATATAGTGCAGCACTATCGTTCGGCGCATAAAATGGATGCGCCAGCAATAAAGTTTAAGTCGAAACCAACAAATGATGCGAGCGATAGCTATGCGTGTGATATGTGCCTTTTTGAGACGCGAGTGCGCAACAATCTTAAGGTGCACTATAAGAATAGACATAGAACGGACGCATCGGAAGTGCAGCTACGTCCAGCTAATATGGGTATATCTAAAGCGCCAAAATTAGTACCACCACCGCCATTAAAACCACAACCAGATTATCCTTCTGGCCTAACCTGTGCCATGTGTCCGGCTGTCTTCTACATTCGCAGTAAATATAAAGAACACCTAAAGGAGCATATACTGACATCGACTACAAAAGATCGGTCAAGaactgttttaataaataatgccGCAACAATAAAAGCTGAAGAGACAGTAACCGAAACACAACCCATATCAACGCAAACAGCAATATCCTCAATATTAAGTCCAATGGATGTCATGGTGGATGTGGATGATAGTGAAAGCCAAGCATTCATGAGTAGTATATCAGCAGCGGCAGAGGAAGCAACAAACACAGTTCCAACCTTAACAAATGCATCCGATGTTATGGTAAATGGAACTATCGTGACAACAACGACAGCTTCTATGGATAATGCAGATGTGTTTTCAGTGAATATAGATCTTGAGAATATGCTAGGCATCGATGATTTACCTAAGGTGTCTACACTTACGCCCGCTTCAAGTGTTGGCTTAGATGCAACAGTGCCAGCGCCAGAGGTGCCAATGCTCTGCGACATGGACTTTATCGATAGCACTGATGTGGCAGCAATTTGTACCATACCCGCCGACGATATACAAGTTGCCGAAGGCGATGATGTTGTCATTGATAACAACACAATTAATAATGTTGACTTCGATCCCGATGCATATTTTGAGGATTTCTTGGAGGAGGAAgaagacgatgacgacgacgaaggAGATGgtgatgaagatgatgacgatgaggaGGAGAATGATGATGAGAATGATAATAATGGCACGACAATCGATCAGAATCAATTGCTGTTGACTAGCGACGATGACGATCTCGACGATTTCGATGACGAAGAGTCAAAGTATCTGCAAAAACCCTTTTGCATACACTGCAGTAAGAAGTTTACAAGCCAATATCACTTCGAAAATCATATGTTTTTGCATCGTGGTTTGGCGCCCTATCGTTGTGAGATGTGTACGAATCTTTATAATACGAAACGCGCACTTATAAGGCATTACAGAGCAGTACATAAACGTGTGCCAACGCGTGACATGGTGCAAGCGAAGGGCGATAAAGTGGTAGTAGATCGAACGCCGGTGGAGACGCTTAATGTGGACGAACAACGACCGGTGACGCTAATGTGCGCCAAGTGCCCATATGAAGCTTTAGAACGCGCTGAACTGTTGTTACATCTGAAGAATCAACATTATGGCATAGATAATGAACTACCCTTTGAATGTTCACGCTGTATACGTTcgtttgtgacgaagaaatcgCTGGTGCGGCATCTGCAGCGCAGTCATCTTGTTGCCACGATCATTGAGCAGACTACGACTACAACAAGTACGGCAACAACGAAAACGACAACATCTACACCGACAACGACTAATACAGAGCTTATGACGTCGGCGCGTACCATGCCGCCGCCTAGTGTGAGCCGTTGCGcAATCAATCTCAAACTTCAATCACTCCAAATAACAaatctaaaacaacaacaaccaacaaaaaactacgttcattttttaatgatgatgatattgatgtcgAACAACATTGATGCTGAACACTTGTATGCAGGCACGGACGCAACAGCAGTACATATGAATGTCAACGACGACAGCAGCAACCGAGCAGAGCAgccaaattatgcaaatgttgATGTGACTGCAACGCTGGAATTAGAGCCAATGTCAACATCTCTAGCTGCGCTACTTGATTTCGACTACAATTTTATAGATACAAACACGACAATGAATAATGGCGACGTGTGCGTCGATGAAGGCGGCAGTGCTATTCtaaccaaaaatacaaaagaaaatgcaaTAACAAACGTTAAGCCCACACAACAAGATGGCAGCGCGAAGCAGGATTTTCAATGTAGTATCTGTTACGGTAAATATGCTAAGCTTACGCTGTTGAAGATTCATATGAAGCGTCACATGTCACGTGACTACGCTTGTGATGAgtgcagcaaaaattttgttacgCGCACCGATCTAGAACGGCACAAGCGTgtacacagcacagcacacaaatttaaatgtaatgAACCGGATTGCAACAAGTTGTTTAGCTATAAACATCACCTTAAGCGGCATCAGGATGCAACACATAGTATGAAGCGCTTCACTTGTCCAGTGCCGGAGTGTGGACGCAAGTTGACTACGCAGACACAGTTTAAAGTCCATATGGACAGACATAAGGGAAAATTGTGGCCGTACAAGTGCATGGAGTGCGATCGACGCTTTTCGCGGCGGATACAtttacgACGACATGCGCTACGCGTGCACAATCAGGTTTTGGATGATAATGTCCTTACAGAAATCTACCGCAGCAACGCTGGCTGCCCGAATCGTTACGATGCAAAGAATTATAATCTCAGCGATGAACAATTGCTTGAAACCAGCACCGTTGCAGCTGTAATAGCGCCCACAAAGACAATGATTGCTGCGTCAGTTGAACAGCAACCGGAGGAGGAAGTCAATGTATTGCCAGAGGCTTGTTTCGTATTTTCCGAAACGGATGATGCTGTTGTACATATAATGTAA
- Protein Sequence
- MAISGEAIDFKLCCRCCLKSDEDFYKLDAFMVGDINNEDISLLQCLVRTINQEDIPELPKYICDTCTKMLHISHNFVQNALIAHEVLRHKLCPAKCEGAAQAENVEMRWPPNGKNIHKSAIATQTATELEIKKDADVNTSPLSSEPLRFQCKVCGEGMHTRDALKEHIRLHLDLITYSCQMCNYDTRVRSKIMLHYTTVHRTQPTPQQLQLRPFTKVKHEPLSEATNATTVSHTCTTEDLELLIPAAMTAQELTQQHALDKANNLRQLTKCSISNQETYQQRNAAKVRKLGDDVINMHSDTQQTTLPTVLAKATDDVSALEQTLPSDFDISTLGLTSDIVNVASEFVVMPDGSLEQKIENGVIIQYINAAEPAVQDNILDNNGFELAQMMEIDDIIVEEEESIEQQSLEHKNTVTTNIEMPQTTKRQTASTTTAEAKERLQLSIMRKQQRCTVCTKIFLSPNRLRAHMLTHKNVPKYHCDMCNFFTLLSADIVQHYRSAHKMDAPAIKFKSKPTNDASDSYACDMCLFETRVRNNLKVHYKNRHRTDASEVQLRPANMGISKAPKLVPPPPLKPQPDYPSGLTCAMCPAVFYIRSKYKEHLKEHILTSTTKDRSRTVLINNAATIKAEETVTETQPISTQTAISSILSPMDVMVDVDDSESQAFMSSISAAAEEATNTVPTLTNASDVMVNGTIVTTTTASMDNADVFSVNIDLENMLGIDDLPKVSTLTPASSVGLDATVPAPEVPMLCDMDFIDSTDVAAICTIPADDIQVAEGDDVVIDNNTINNVDFDPDAYFEDFLEEEEDDDDDEGDGDEDDDDEEENDDENDNNGTTIDQNQLLLTSDDDDLDDFDDEESKYLQKPFCIHCSKKFTSQYHFENHMFLHRGLAPYRCEMCTNLYNTKRALIRHYRAVHKRVPTRDMVQAKGDKVVVDRTPVETLNVDEQRPVTLMCAKCPYEALERAELLLHLKNQHYGIDNELPFECSRCIRSFVTKKSLVRHLQRSHLVATIIEQTTTTTSTATTKTTTSTPTTTNTELMTSARTMPPPSVSRCAINLKLQSLQITNLKQQQPTKNYVHFLMMMILMSNNIDAEHLYAGTDATAVHMNVNDDSSNRAEQPNYANVDVTATLELEPMSTSLAALLDFDYNFIDTNTTMNNGDVCVDEGGSAILTKNTKENAITNVKPTQQDGSAKQDFQCSICYGKYAKLTLLKIHMKRHMSRDYACDECSKNFVTRTDLERHKRVHSTAHKFKCNEPDCNKLFSYKHHLKRHQDATHSMKRFTCPVPECGRKLTTQTQFKVHMDRHKGKLWPYKCMECDRRFSRRIHLRRHALRVHNQVLDDNVLTEIYRSNAGCPNRYDAKNYNLSDEQLLETSTVAAVIAPTKTMIAASVEQQPEEEVNVLPEACFVFSETDDAVVHIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -