Lmac007154.2
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- -
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010001183.1:580455-588056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00033 0.02 15.6 3.4 1 23 266 288 266 288 0.98 2 11 0.0016 0.1 13.4 10.5 1 23 296 318 296 318 0.96 3 11 8.7e-05 0.0054 17.4 6.5 1 23 324 346 324 346 0.98 4 11 0.00049 0.031 15.1 2.3 1 23 352 374 352 374 0.95 5 11 3.5e-05 0.0022 18.7 0.5 1 23 380 402 380 402 0.97 6 11 3.4e-06 0.00021 21.9 0.1 1 23 408 430 408 430 0.98 7 11 0.0004 0.025 15.4 2.9 1 23 435 458 435 458 0.97 8 11 3.7e-05 0.0023 18.6 0.7 1 23 464 487 464 487 0.96 9 11 0.00027 0.017 15.9 0.1 1 23 553 575 553 575 0.98 10 11 0.015 0.92 10.4 3.5 1 23 703 725 703 725 0.96 11 11 0.0071 0.44 11.4 4.9 5 23 738 756 730 756 0.92
Sequence Information
- Coding Sequence
- ATGTGTGCTGCTCAAAGTAATCCGCAGCCAAGCTTTGGCACCTACACCTGGGGCTTCGCTGACAACACACGGGCTGAGTCTGTGTTGGAAATATCGCCGAATATTAATTACACCGTTAGCGGTGAGACTATGCCATATCTGCTGTCCACGGATGGGTCGCTTACTGTACAAAAGGATGTTAAAGGCGCACTGGCCGCCTCAAATAAAGGCAACGTCGTCCGTCGCATGTTCGTTGTCAATGACACATTTGCGCCGGGGACACAAAGAGTCATAACCACAGGTGGCGCTTCGACGGTGGTCAAGAAACCGGATCAACAGGTGTTGAGCATAAATTGCGATAAGAACTATCTATTGGTCGATCAGGCAACggcagctgcagcagcggcggcagacCATTCGCACGCGCTGACAAACGGCCTGATCGACGCTAAGGGACAGACCGTACTGACATCGGCGTCTGCCACACAGAAGACACATTTCAGTCCCATTGGGCCGTTGCATCTCACACCTGAAGAATGCAATGAGATATTGATGAAACGGGCCCTTGCTGCCACCCATCAGACGCACACAATCACCACGGCCGAAGGACACCCGGCGACAGCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTTATACAAGGACTCGAAGAGAATGAGGACTCACAGGGTGAAGCGCCCAATTTAAAGTTGGAGCCAGGCACACTAGAATTGTCCCCAAAGACCGAACTACAGGAATCTATGCATTTCAATGAAGGTGATGCGACGATCAAGAAAGAACGACCATATAGCTGTGATGAGTGCGGCAAATCGTTTCTGCTCAAGCACCATTTGACAACACACGCACGCGTCCACACAGGTACAGgCGAACGTCCGCACATCTGTACACACTGCGGTAAGAGTTTCGCGCACAAACATTGCCTCAACACGCATCTGTTACTGCATTCGACAGATCGGCCGTATCAGTGCAACGAATGCAAGAAGAGCTTTACGCTCAAACACCACCTGCTGACGCACTCGCGTGTACATAGTCGTGACCGTCCGTTTGTTTGTCAGGAATGCGGACGATCTTTTCCACTGAAGCGGCATCTGGTTACTCACAGCAAGTTCCACGCTGGCGAACGGCCCTATGTCTGTGAGGAGTGTGGCGAGAGTTTTGCACAAGAAAATCACCTGATTATGCATTCGCGTTTTCATGGCTCGATCAACCCGTTTGTATGTCCCGATTGTGGCGCAACGTTCCCGCGCAAATTCCAGCTGGTCAACCATGGGCGCATACACGGAAAAATACCACACTCATGCACTATGTGCGGCAAAGAGTTCTTGCAAAAGCGGACGCTAGTGTCTCATATGCGTCGTATGCATACTGGTGATCAGGGTCATCCTTGCGTCACTTGCGGTGAAAGTTTTGCCACCAAGGCTGAGCTGCATCAGCATGTGCGTAGTGCACACAGTGGCGCGAATGCCACCAACACAAATACAACGATCATAGCAAATCAGCAGCTACAACAGCCTCACCATCAAGCACAGGTACCGTCTCAGGCACAATCAGGCCATCCACAGACCATAACTGTCGTTAGTAATCCTGGTAACTCAGCACTGCTTACAGTAAGCGCTACAGATGCCAACGGTGTGGCACGGCCTCAGTTTGTTTGCCGTGAATGTGGAAGTGCCTTTAATAGCCGTGAAGCGCTAGCGTTACATTTGCGACTACACACTGGCGACAAGAGTCTGATGACTGATTTATGCGCTTTGACAGCAGCACTGCCAGGCCATTTCCTGAGCACGGCCAGTCTAAATCATGGCACAGTAGTAGCCACCAATCCGAATTTGGTGGCACAGAGTCCAGTGCCTGTGCAGATCATATCATCCACCGGACAGGTGATGTCGCAGACCACACTGGTGCAGGCCGCCAACTCAACACATCCGCAGACGGTGGTCACCACAGTGCCGACAATGCCCATACAAACACATCAGCAAACGCATCTCCATCATAATGccgcacagcagcagcaacaacaacaacaacaacagcagcagcagcaacaacaacaacaggcagCACAACAGCAGCATGCACAAAATAAGCCGAAATCACATTTCTGCAGCAGCTGTGGAAAAGGCTTTGCCGCAAAGCACGGTCTTATGCAGCATAATCGACGCCATCCGAATGGTGGCTGTACGGTGCGAACACATGTTTGCGAATGCGGCAAGGCATTCTTCCAGAAGAACCATTTAATGTTGCATCAGCGACAGCATCTGGAAACGAAACCTGCCATTTCACAGCAACAGGATGACActcaacaacagcatcaacagcagcagttaaATACACGCGAAGTCATCATTGGAAATCAGTCTGTGCACGTTCAAGTTCTGCCAGCATCAAACCAGGCCCAAGTCATCAAGTACGAGATTAATATGCCTCAGGACCGACAACAAAACATGCAAACGGAGTAA
- Protein Sequence
- MCAAQSNPQPSFGTYTWGFADNTRAESVLEISPNINYTVSGETMPYLLSTDGSLTVQKDVKGALAASNKGNVVRRMFVVNDTFAPGTQRVITTGGASTVVKKPDQQVLSINCDKNYLLVDQATAAAAAAADHSHALTNGLIDAKGQTVLTSASATQKTHFSPIGPLHLTPEECNEILMKRALAATHQTHTITTAEGHPATASDILPGISVQVQKVIQGLEENEDSQGEAPNLKLEPGTLELSPKTELQESMHFNEGDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGTGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCNECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSINPFVCPDCGATFPRKFQLVNHGRIHGKIPHSCTMCGKEFLQKRTLVSHMRRMHTGDQGHPCVTCGESFATKAELHQHVRSAHSGANATNTNTTIIANQQLQQPHHQAQVPSQAQSGHPQTITVVSNPGNSALLTVSATDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNHGTVVATNPNLVAQSPVPVQIISSTGQVMSQTTLVQAANSTHPQTVVTTVPTMPIQTHQQTHLHHNAAQQQQQQQQQQQQQQQQQQAAQQQHAQNKPKSHFCSSCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQDDTQQQHQQQQLNTREVIIGNQSVHVQVLPASNQAQVIKYEINMPQDRQQNMQTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00062175;
- 90% Identity
- iTF_01196162;
- 80% Identity
- -