Lmac014499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophenga maculata
Gene Symbol
-
Assembly
GCA_035044805.1
Location
JAWNNP010002837.1:939763-942683[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0028 0.17 12.7 1.9 3 23 211 231 209 231 0.98
2 16 0.0039 0.24 12.3 3.0 1 21 238 258 238 259 0.94
3 16 0.0033 0.2 12.5 0.3 2 23 299 320 298 320 0.96
4 16 0.064 4 8.4 4.9 1 23 401 425 401 425 0.96
5 16 0.85 53 4.9 0.6 1 22 432 453 432 453 0.89
6 16 0.027 1.7 9.6 2.4 2 23 463 484 462 484 0.96
7 16 8.8e-06 0.00054 20.6 0.4 2 23 492 514 491 514 0.97
8 16 0.00044 0.027 15.2 1.4 2 23 522 543 521 543 0.96
9 16 0.011 0.67 10.8 0.0 2 21 570 589 569 590 0.93
10 16 0.0026 0.16 12.8 3.7 1 23 640 663 640 663 0.97
11 16 0.34 21 6.1 2.6 1 23 670 692 670 692 0.97
12 16 0.009 0.56 11.1 1.5 2 23 700 722 699 722 0.95
13 16 0.00014 0.0084 16.8 2.3 2 23 755 777 754 777 0.94
14 16 0.056 3.5 8.6 1.6 1 21 794 814 794 816 0.92
15 16 0.00029 0.018 15.8 2.9 1 23 822 844 822 844 0.99
16 16 3.6e-06 0.00022 21.8 1.7 1 23 850 872 850 872 0.97

Sequence Information

Coding Sequence
atgccagaAAATGAGATTTGCCGTACGTGTGTTTCGAGTACGGatacaaaactttataaacttAAATCGACGTGTAACGGAAAATATGCCGGAAAGCTGCTGCTAGATTTGTTGAAGGAACTAATTGAGTTTAAAcCCAACATGGCATATGAGTCGCTTATGCCACAGCAAATTTGTGGCAATTGCATGCAAAAATTGAGCAGCGCCTACGATTTTATGTTGCAAGCGCGTGAGGCAAATCAGCGTTTAATAGAAATGCTTAAGCAAGAAGCTACTAAGTTAGACGCTGATGAATGCTGTTTGCAAGAATTACCATTGACAGTTTTATTAAAGGAAAACTCGCCTTTAGATATTAAACGAAAAGAATTGAGTACAAATAATGAAGCTATACCGCTTTTGGATTGCACAGCAGCCACAACAGCGGAATTACAGATACAAGTGTTTAATGAAAGGAATAGCAAGCAGCGTATATTGGATCCTTTAACAACAGTAAAAGAAGTGCAGCTAAGCCTAACCCCAGATGACGAACACTACTCCGGCGGTGATGACAACACTTCCATTGATGATATGCCATTAATACAGCGTAAGCGAAAAACAACTCTTGACAAACGTAAACCAAAGCCATTTGGTTGTGATCAATGCGAACAACGTTTTCGACGGCTTCGCGCTTTTAATTTACACAAACGCACACATTTGATTAAGAGTAAATGGCATTCTTGTCCGCATTGTCAACATAAATTTGGACGACAGGAAACGCTGGAGTTGCATCTAAAATACGATTGTAATAAACCGATAACAAAGCCAACCAAAACATCCGCTACTATGCTATGTGAACTTAAGAAAGCTAAAGCACTTGATCTGAATTTATGTCAGCCACATGGTTATAAGGTTATACAGTGCATGATTTGTCTAAAAACATTTCCAAAGATTACACAGCTACGTTCTCATTTAAGTGTACATCCTGAAATTAATGCACTGGCGGCGCGTGAGACACAAACGCTAAGACAAATAGCCGATGGCTTCTATTCGGATATGGATACTGATATAACGGAAACGTTGCTACTGGAACGTATACGTAATGATCTACGCGCGGAACGATATGTACATTTTTACTCAATAACCAATCAAGCGGGCTATGAACTAAATTTGAATACTACAGAGACTGAAAGCGATGAAAATGATGCCATTGAAAAGCACGATTACAAATGTGATTTATGCACGCAACACAAATTCCGACGTAGATATGAACTTTTTGAGCATCAGCGTTTGCAACACGAATGGCACGAAGCGCCGCACATTTGTCCACGTTGCGATGCACGTTTCCTCAGCGAAGATGTGCTGAAACACCATTACCAGACACAGTGCCGTGATAAACACAAACGGCTTATTTGCAAAAAGTGTCCGTTGCGTTTTCGCTGGAGGCACAACATGAAAGCACACTACAGAGAACACAGAACTAAGTTACAAACACTTAAATGCGAGCAGTGCAACCGCAGCTATGATGATAAGAAGGCACTAACAATACATATACGCACAGTGCACACGGATGCTGCGAGTTTATTACCATGTCAATGGTGTCAACGTATCTTCTATCGACGTgactattttttaaaacatctcAAGCGTCATGGTCTAAGTGAGCTTGACTTGCCACTGGCGGAGATGTTTATAAAAGCTACAGAGCAGCCAAATGGTGTTAAGCGTATTAGTTGCAAGATATGTCAGTTGCAATTCGAACGTATTGCGGATTTGAGAACACATATACTAATGGAACTTAACCTAAATTTAAGTGCACATCAAATCTACGAATCAACGGCCAAATACTCAATAACAAACGAGGCCGGCTTTGAGTTACATTTGGATGACACAGAAACTGAAGATGATGAAACAGCGGGTAGCACACAACACAGCATACCGTACAAATGTGAGATCTGTCAAGTACAGTGTCGCCGGCgttatgaaatgtttaaacatCAACGTGCAATGCACACAATGCAACCATTGCCGTACGCATGTAATAAATGCATATTCAAATGTGTTTCCAAGCGTTTACTGGTGCAACATCAGCTTACGCATTGTAACGAGGCGTATAAACTGACTTGCCAGCAttgcaattataaatttatgtggCCAGAAAATCTAAAGCAGCATATTCAATTACAGCACAAAGACATTAAAACAGAAGCTGATACAGCTGCGGAAGATTTGAGCGTAGTTGATTTAACCAAATCAGAACCAGTGGCTGCTACTACGGATGTTTTAAATTGTCCACACTGTGAACGCACTTATGTGCATCAGTCGAGGCTCAACAATCATATACGTGATGTGCACAGCAATGATGcggacaacaaacaaaaacagcaagaaGCAAAGCAGAAGTATCTATGTTCCTTTTGTGGCAAAAGTTCTCGCTCACCGGGAGAAATGCTGGAACATACGCGTTGTCATACAGGcgaaAAACCCTTTAAATGTCAGTTCTGTGAAAAGACGTTTTTGCGGCGTTATGGCTTACAGTTGCATCTTAGAACGCACAATGGCGAGAAACCGTTCCATTGCACAGTTTGCGGCAAAAGCTTTGCACGCGCAAGTAAAGTCAAGCAACACATGGTAACGCATAGACGCATGAAACCGCATAAGGCGAACATTGTTAAATAG
Protein Sequence
MPENEICRTCVSSTDTKLYKLKSTCNGKYAGKLLLDLLKELIEFKPNMAYESLMPQQICGNCMQKLSSAYDFMLQAREANQRLIEMLKQEATKLDADECCLQELPLTVLLKENSPLDIKRKELSTNNEAIPLLDCTAATTAELQIQVFNERNSKQRILDPLTTVKEVQLSLTPDDEHYSGGDDNTSIDDMPLIQRKRKTTLDKRKPKPFGCDQCEQRFRRLRAFNLHKRTHLIKSKWHSCPHCQHKFGRQETLELHLKYDCNKPITKPTKTSATMLCELKKAKALDLNLCQPHGYKVIQCMICLKTFPKITQLRSHLSVHPEINALAARETQTLRQIADGFYSDMDTDITETLLLERIRNDLRAERYVHFYSITNQAGYELNLNTTETESDENDAIEKHDYKCDLCTQHKFRRRYELFEHQRLQHEWHEAPHICPRCDARFLSEDVLKHHYQTQCRDKHKRLICKKCPLRFRWRHNMKAHYREHRTKLQTLKCEQCNRSYDDKKALTIHIRTVHTDAASLLPCQWCQRIFYRRDYFLKHLKRHGLSELDLPLAEMFIKATEQPNGVKRISCKICQLQFERIADLRTHILMELNLNLSAHQIYESTAKYSITNEAGFELHLDDTETEDDETAGSTQHSIPYKCEICQVQCRRRYEMFKHQRAMHTMQPLPYACNKCIFKCVSKRLLVQHQLTHCNEAYKLTCQHCNYKFMWPENLKQHIQLQHKDIKTEADTAAEDLSVVDLTKSEPVAATTDVLNCPHCERTYVHQSRLNNHIRDVHSNDADNKQKQQEAKQKYLCSFCGKSSRSPGEMLEHTRCHTGEKPFKCQFCEKTFLRRYGLQLHLRTHNGEKPFHCTVCGKSFARASKVKQHMVTHRRMKPHKANIVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-