Lmac014497.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- -
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010002837.1:933267-936329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.1e-06 0.00056 20.5 4.5 1 23 211 233 211 233 0.98 2 17 0.00019 0.012 16.4 3.6 1 23 241 264 241 264 0.96 3 17 0.061 3.8 8.5 1.2 2 23 301 322 300 322 0.95 4 17 3.1 1.9e+02 3.1 0.5 1 23 405 429 405 429 0.82 5 17 0.33 20 6.2 1.2 1 20 436 455 436 457 0.93 6 17 0.066 4.1 8.4 3.7 1 23 466 488 466 488 0.95 7 17 0.00014 0.0086 16.8 1.2 2 23 496 518 495 518 0.96 8 17 0.00026 0.016 16.0 2.2 2 23 525 546 524 546 0.96 9 17 0.0048 0.29 12.0 0.1 2 21 573 592 572 593 0.93 10 17 0.0044 0.27 12.1 3.0 1 23 643 666 643 666 0.96 11 17 0.52 32 5.6 1.3 2 23 704 726 703 726 0.95 12 17 0.00063 0.039 14.7 0.6 2 23 765 787 764 787 0.94 13 17 3.4e-05 0.0021 18.7 0.6 1 23 802 824 802 824 0.96 14 17 0.0058 0.36 11.7 3.3 1 23 830 852 830 852 0.99 15 17 6.2e-06 0.00038 21.0 1.1 1 23 858 880 858 880 0.98 16 17 0.0016 0.1 13.4 7.0 1 23 886 908 886 908 0.98 17 17 0.00018 0.011 16.4 0.3 1 21 914 934 914 938 0.90
Sequence Information
- Coding Sequence
- ATGTCTTTATGCCGCACTTGTGACACCAGTTCGGCGACTGAGCTATTTGAGCTAAAATCGCCGTACAACCTAAAGTATCCGGGCAAGCAACTACTTGATTTGTTGATGGAAGTAGTTGAAATAAATCAAAATATGGCATATGAATCGCAATTACCACAAAAAATTTGTGCCAATTGCACGGAGAAGCTAAATATCGCTTACGATTTTGTGTTGCAAGCGCGTGAGGCAAACCAGCGGCTGTTAGACGGTCTGAAACCAGATTTCAAGTTAAGCACAGTGGAATGCTTACTAAGAGAACTGCCGCAGGATCAGTTAGTTGTAAAATTAGAACTCGGTGAGGAAGATTCAACGCCCATGGAATTTGCTGAAACGTTAGTGGAGCAGCAAGACTCAGACCAGTACGATAACGACAACGAAATGCAGGATGATtgttttaaagataaaaaagatGATCCATTAACAATTATAAAggaaagaaaatgtaaaacacTGCCCAAACAAAAAGACTTTCAAATTGAAGATGACATTGGCGTTGATACCAGCAGCAGTGATGACGATGATGCACCACTCTTAAAGCGTAAAACCAAAATGCAAAAAGCTAAGCTAAAGTCGGAGAAAGCATTCAAGTCACATACCTGTGATGAATGCGGCAAAACATTTCGCTTTGAAAGCACTTTAAATACGCACAAACGAAAACATTTACCGAAGCACAAAAAGAGTCACGCTTGTACACAATGCTCACGTGTATTCAAACGCAAAGATAGGTTACAGCAGCATGTAAAAACTTCACATTCGGCGACCGATGGTGCGCCACAGCAACATATACCAAAAACTTCCGAACACAAGTTGGTAAAAGAGCTTGACTTGAATCTTTGCAAGCCACATGGTTGCAAGGTAATACAGTGCATGAtttgtttgcaacattttacaaaaatcaAAGAATTGCGTAATCATTTAAGCGCACATCCTGAAATTGATACATTCTCGAGACGCACAGATTCCATACAAGATATTGCCGTATCATTCTATCGTGATATGAAAGAAGATGTTACTGAAGCAGCATTGTTGGCGCGTATACAAAAAGATCTGAAATTGGAACAGTATGTGCATTTTTACTCGATAACTAACCAGGCAGGTTACGAGTTGAGATTGGAAAGCTCTGACacagatgaagaagaagatagGAGGAATATTAACACCAGAAAACAACTATACGCTTGCGATTTATGTGCTAATATTAAATATCGTCGAAAGTATGAACTACTCGAACATCAGTTTGAAAAACATAGCTGGGAGGAAGCACAACATGTCTGCAGGCGTTGCGAGGCGCGTTTCGTAAACAAACAAGTGTTGCAGCATCATTACGAGTCATTATGCTGTAATTCCGTAAAGCGTTTTCTATGCAATCGTTGTCCATTACGTTTTCGCTGGAGGCACAATCTTAAATCACATTATAGGGACCATAGAAGTCTGCCAACAGCAGTTATGTGCGAGCACTGTGATCGCAGCTATGACGACAAAAAATCGCTGACAATACACAAGCTTACAGTGCACACAGCTTCGACGTTGATGCCTTGTCTTTATTGCAATCGTAAGTTCTATCGACGCGACTATTTTGTTAAGCATCTCAAGCGTCATGGTCTGAAGGAGCAAGATTTACCACTGGCCGAAACGCTACTTAAGGCTACATCACATGCCAATGGTGTTAAGCGCATCAGCTGTAAAATTTGTCATTTGCAATTCGAACGTATTACGGATCTAAGAGCACATATATTAATGGAGCTCAAGTTAAATTTAAGCGCACATCAGAGTTACGAATCATTGCAAAACTATTCGATAACGAACGAGGCAGGCTTTGAGTTGCACTTGGATGACTCAGAAACAGACAATGATGAAACGGTGGTCAGTGCAATGCAAAACATACCATACAAATGTGAAATATGTCAAGTGCAATGTCGTCGGCGCTTTGAATTGTTCCAGCATCAAAATGCAATGCACTGCCGTGATCCAATGCCGCATACATGCGACAAATGCGTATTTAAGTGTGTAAATAAGCGCATACTCGAGCACCATCAGCGAACACAATGTCATAATCCATTAAAGCAATTGAGCTGCGAGCACTGTAGCTATAAATATATGTGGCTAGAAAACTTGGAACAACATCGCAAAATACAACATGCTGACATACTTGAGTCCAAAAGTGAAGTTGGTGTAAGCCTGCCTGAAGGCACGAGCGAATCGACAGCACTGACTGCGCAAACAGAGACAAAAGCGGCACCAGTGCCGATATTAAACTGCCCACATTGTGATCGCACTTATGTACTGCTATCACGACTGAATAATCATATACGCGACGTGCACAGCGAAGccggcaaaaagaagaaaaaggaatCAGAACGTAAATTTCTTTGTTCACATTGTGGGAAAGAGTCATCATCGGCGGCTGCCTTGGTCACGCACATGCGTCGTCACACTGGCGAAAAACCTTTCAAATGTGACATGTGCGAATCTGCCTTTACACGACTGTGTGAGATGCAGGAACATCGCCGAAAGCACACTGGCGAAAAGCCTTACCATTGTACCGTTTGCGGCAAAGATTTTGCACGCGGTGACAAACTGAAACGGCATATGCTCATACACAGCGGTCTTAAGCCGCATAAATGTACTTTCTGCGAAAAATGTTATCGCCAAGCCAAAGATCTCAAATTGCACTTGAAACAGCATACCGGAGAAACGCCATTCGAATGCACGACGTGCGGTGAGCGCTTCATACAGCGTGTTACATTGGAAAAACATCGTGTTATGCGTGGTCATTTTGAAACGATGGTGTAG
- Protein Sequence
- MSLCRTCDTSSATELFELKSPYNLKYPGKQLLDLLMEVVEINQNMAYESQLPQKICANCTEKLNIAYDFVLQAREANQRLLDGLKPDFKLSTVECLLRELPQDQLVVKLELGEEDSTPMEFAETLVEQQDSDQYDNDNEMQDDCFKDKKDDPLTIIKERKCKTLPKQKDFQIEDDIGVDTSSSDDDDAPLLKRKTKMQKAKLKSEKAFKSHTCDECGKTFRFESTLNTHKRKHLPKHKKSHACTQCSRVFKRKDRLQQHVKTSHSATDGAPQQHIPKTSEHKLVKELDLNLCKPHGCKVIQCMICLQHFTKIKELRNHLSAHPEIDTFSRRTDSIQDIAVSFYRDMKEDVTEAALLARIQKDLKLEQYVHFYSITNQAGYELRLESSDTDEEEDRRNINTRKQLYACDLCANIKYRRKYELLEHQFEKHSWEEAQHVCRRCEARFVNKQVLQHHYESLCCNSVKRFLCNRCPLRFRWRHNLKSHYRDHRSLPTAVMCEHCDRSYDDKKSLTIHKLTVHTASTLMPCLYCNRKFYRRDYFVKHLKRHGLKEQDLPLAETLLKATSHANGVKRISCKICHLQFERITDLRAHILMELKLNLSAHQSYESLQNYSITNEAGFELHLDDSETDNDETVVSAMQNIPYKCEICQVQCRRRFELFQHQNAMHCRDPMPHTCDKCVFKCVNKRILEHHQRTQCHNPLKQLSCEHCSYKYMWLENLEQHRKIQHADILESKSEVGVSLPEGTSESTALTAQTETKAAPVPILNCPHCDRTYVLLSRLNNHIRDVHSEAGKKKKKESERKFLCSHCGKESSSAAALVTHMRRHTGEKPFKCDMCESAFTRLCEMQEHRRKHTGEKPYHCTVCGKDFARGDKLKRHMLIHSGLKPHKCTFCEKCYRQAKDLKLHLKQHTGETPFECTTCGERFIQRVTLEKHRVMRGHFETMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00891184;
- 90% Identity
- -
- 80% Identity
- -