Lmac007232.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- -
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010001183.1:1280784-1284826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.062 3.8 8.5 1.8 2 23 340 362 339 362 0.95 2 18 0.014 0.86 10.5 0.0 1 23 369 394 369 394 0.92 3 18 2.5 1.5e+02 3.4 4.3 2 23 405 426 405 426 0.93 4 18 0.67 41 5.2 0.4 3 23 467 488 466 488 0.94 5 18 0.0007 0.043 14.6 0.6 1 20 494 513 494 515 0.93 6 18 0.035 2.2 9.2 2.8 1 23 520 543 520 543 0.96 7 18 0.00046 0.028 15.2 1.0 1 23 547 569 547 569 0.98 8 18 0.17 11 7.0 0.1 1 21 577 597 577 598 0.92 9 18 7.5e-05 0.0046 17.6 1.0 1 22 617 638 617 641 0.91 10 18 0.35 22 6.1 2.0 1 20 646 665 646 667 0.89 11 18 0.0054 0.33 11.8 1.8 1 23 681 706 681 706 0.96 12 18 0.004 0.25 12.2 2.4 1 23 732 755 732 755 0.96 13 18 0.011 0.67 10.9 0.6 2 23 761 783 760 783 0.95 14 18 8.3e-05 0.0051 17.5 0.1 2 23 787 809 786 809 0.96 15 18 0.004 0.25 12.2 4.1 1 23 815 837 815 837 0.96 16 18 0.0043 0.27 12.1 0.1 1 23 841 864 841 864 0.95 17 18 4.8e-06 0.0003 21.4 2.8 1 23 870 892 870 892 0.98 18 18 0.00047 0.029 15.1 0.3 2 23 899 927 898 927 0.85
Sequence Information
- Coding Sequence
- ATGTCGGAAACCAATGAACTGGCCGATCCTTTAGCCGAACAAGTCGTTTTACTTACGCTTAATTGTTTACATTGCAAAAATACAATCCAAAGCAATGTTTATCAAGCGATTTTCGATGAACTTGGTATCGAATTGGAATTGTCCAAATTGTTGGAAAAGTATTTTGATCTGaatgtaaaagaaaattcaGACGAGTTGCAGTTGCTCTGTGAAGATTGCCTCAATCGTCTGATAACAGCATATGATATCGATGAgcatgaaaaagaaaaagatgcTGCAGCGCCTGCCCCTTCGTCGGCGGCAAACTCTACACTGATTTTGAGTGCTAAGGACGTGCCTGCTAATGAATCGCTTGATAATGAATCATCTGAGAAATCGTTTGCTAATCAAGTCCTACAAATTGTTGTGCCTTCGCATACTGAAGAATTTGTACTAGACTCAGTTAACGAAGCAACTACACCGAAGTCAAGCATATCGAGTGCAAATTCCAGCGTTGTACTTGTTACTACAAAGTCTAGACGAAAAAGTATTTTAGTCGAACGTGATGACACCTGTACACAAGATGAAATTTCAACGctttttgaagaagaaatagtcGATATCGATGATGTTGTGGAAAGTGGCGCCGATGAGGATCCAAATATCATTGTAAGTGCAACAAGCAACAATGTGGGGGAGCACCAAGACATTACCATTGAAACGCAGATATTATTCGAGCATGAATTTGATTCCTGCAATGGTGCAAAAGATCCAATATACCCACAGCAACTAAGTGCCATTCCATGCAATGAGATAGTTACACCGaccaatgatgatgatgtatcTGATAACGCGGATAACTATTCTGACGAATACGATTCTTTTGAAGTGCAGGATGCCGACAAGGATGTGCCGGAAGAATTGCCATTTTACACACTGTTACCGCTGACGGATGATACGGTATCAACCAATATCGAGATGTTTCTTAATGAATCGATTTCTAGTGACTTTactaaattgaaattcaaatggACAACAGTTTGCAGTTTATGTTCAACGCAGTGCCGTACATTTGAGAATCTATTGGCACACATTTACAAAATGCATAATCTGCCGAACAATTTTTATCCTTGTCCTATAAACGATTGTGGTATAGAGCTGCCGAATGCAAATCAACTGACAAAACATTTGGTTTTGAAACATGCTCCATTGGATAAtttgcaGATATACGGTCGCTGTTTCGAatgcaaatttagtttttcgAATTTTGTAGTCTTTAATAAGCATTCCTGTGCACACAAGATGAAACGACAAAGAAACATGCGTTTGTACTGTAAATTGTGTGACCTCGATTTCGCCTCAATGCGTCGTTATGTGTTTCACACGCAATTTCATTTGGAAAAGCATCGACCGCGAATTTGCCTAATTTGTGGTTATACACATAAAGATATCGAAAATCTCTTCGAGCATGTCAACTACTATCACGAGTCACCGGACATATATGCTTGCAAAATatgCGACCGCAGATTTAAAGATGCGCAAAAGTTGAGCGAACATAGGCATATCGAAAAACCTCAGTTTAGCTGCAAGGCATGCAAAAAGAATTTCGCTACAAATTCTCGTCTAACTTGCCACATTAAAATTGCACATGATTCATTCTACACATGCGAATTATGCAACAAGGATTTTGTCGGCAAATCTGTTTTCCGTAATCATCAGAAATGGCACACGAATCAGGCATCTGAGCTACACTCGTGCAGTAATTGTGGACTTATTAGTGCGAATAGCGATTTGTTATTGgaGCACACTCTATCGGAAACTGGCGACTGCTTTGGCGCCGACATTAAAGAGGAGATTACCAGTTTTGCGTACACTTGTGAATTTTGTTCAAAGGATTTTAAGAGTAAAAGCGATTTGAAGTTACATCGTGCATCTGGTGTACATTCCGATGGACAATACATTTGTGTGCCATGCAATAAAACTTTCTCAACTATAAAACAATATCATAAACACAAAATCCACTTACAGTCGAATTCAAGAAAATCAAACATTTACTATCTTTATATGTGCAACATTGATAATTGTGATGAATGCTATGCCCAATGGAATTCGCTTTATACGCATAAAAAACGAAGTCATGATGCAATCCAGCGGAAAGAAACAGTTTTGAACGAACAGAAGCCGACTCAAACGAGCACTGTGGAAAAAACAGATTTCATATGTCAGTTTTGTAATAAGGAATGTCGAACACAAATGTCACTTTCAGTGCATATTGCACGTCGGCATAATAatgATAATGTTACATGTGAACATTGTAGTGCGAACTTCAAGGAGGACGCTGCGCTCAAGAAGCATATTAATTACATGCATATACCTATTGAATGCCCGATATGCTTTAAAGTAGTAAAAAATCAACGTAATTTTGCTGTGCATCAGCGTGTGGTACATATGTCAGAAAAGCGCTACTTCTGCAAGGTGTGTAAAAAAGGATTCTTTCATAAGAGCGACATGGAGACCCATGAAaagcTACACGAACAGTCCTATTCCTGTGACGATTGCGACTTTGTAACGAATTACGAAAATTCActtgaaatacatataaatgctGTGCACCGCCACGAATTTAAGTTTGAGTGCTCAATATGTCACCGAAAGTTCGCACGCAAATATGCTTTAAATGTACACCTTAAACGTCATTCAACTAAAGAGAAGTTTGTCTGTTCAGAAACACTGAAGGACGGCGGCTGCAACAAAACGTTTGTCAATGAAATGATGCTGAAAAGACACCTAAAGAAGGCACACAATGCATCATTTGAGTTAGAAACCGTTTTTGAATACGAAACAGTCAacgataatgatgatgacaTTGAAGTTAGTGTTCTGGCCCCGCCAGCCAAGCGGCCGCGCGAAAACGGCGACCAAGGACTTCAACTAAATTTATCGGAATCAAACGATAACGTTGAGGTATCTGAAATAATTGATTGCGAATTAGATGATTTGATAGAAATTGATCACCATAAAGTAAATTCAACAAACGTGAATGAGGATGAGATGGAAGATGACGATGAGGAAGagtacgaatttattttaattaacgaTTAG
- Protein Sequence
- MSETNELADPLAEQVVLLTLNCLHCKNTIQSNVYQAIFDELGIELELSKLLEKYFDLNVKENSDELQLLCEDCLNRLITAYDIDEHEKEKDAAAPAPSSAANSTLILSAKDVPANESLDNESSEKSFANQVLQIVVPSHTEEFVLDSVNEATTPKSSISSANSSVVLVTTKSRRKSILVERDDTCTQDEISTLFEEEIVDIDDVVESGADEDPNIIVSATSNNVGEHQDITIETQILFEHEFDSCNGAKDPIYPQQLSAIPCNEIVTPTNDDDVSDNADNYSDEYDSFEVQDADKDVPEELPFYTLLPLTDDTVSTNIEMFLNESISSDFTKLKFKWTTVCSLCSTQCRTFENLLAHIYKMHNLPNNFYPCPINDCGIELPNANQLTKHLVLKHAPLDNLQIYGRCFECKFSFSNFVVFNKHSCAHKMKRQRNMRLYCKLCDLDFASMRRYVFHTQFHLEKHRPRICLICGYTHKDIENLFEHVNYYHESPDIYACKICDRRFKDAQKLSEHRHIEKPQFSCKACKKNFATNSRLTCHIKIAHDSFYTCELCNKDFVGKSVFRNHQKWHTNQASELHSCSNCGLISANSDLLLEHTLSETGDCFGADIKEEITSFAYTCEFCSKDFKSKSDLKLHRASGVHSDGQYICVPCNKTFSTIKQYHKHKIHLQSNSRKSNIYYLYMCNIDNCDECYAQWNSLYTHKKRSHDAIQRKETVLNEQKPTQTSTVEKTDFICQFCNKECRTQMSLSVHIARRHNNDNVTCEHCSANFKEDAALKKHINYMHIPIECPICFKVVKNQRNFAVHQRVVHMSEKRYFCKVCKKGFFHKSDMETHEKLHEQSYSCDDCDFVTNYENSLEIHINAVHRHEFKFECSICHRKFARKYALNVHLKRHSTKEKFVCSETLKDGGCNKTFVNEMMLKRHLKKAHNASFELETVFEYETVNDNDDDIEVSVLAPPAKRPRENGDQGLQLNLSESNDNVEVSEIIDCELDDLIEIDHHKVNSTNVNEDEMEDDDEEEYEFILIND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -