Lmac014012.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophenga maculata
Gene Symbol
-
Assembly
GCA_035044805.1
Location
JAWNNP010002723.1:1250971-1253837[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2e-07 1.3e-05 25.7 1.2 1 23 209 231 209 231 0.99
2 16 0.0019 0.12 13.2 1.0 2 23 266 287 265 287 0.96
3 16 0.087 5.4 8.0 0.3 3 23 377 398 375 398 0.94
4 16 0.044 2.7 8.9 1.9 1 21 405 425 405 426 0.94
5 16 0.018 1.1 10.2 4.0 1 23 435 457 435 457 0.95
6 16 6.3e-05 0.0039 17.9 0.3 1 23 464 487 464 487 0.96
7 16 8e-05 0.005 17.5 1.7 2 23 495 516 494 516 0.96
8 16 0.17 11 7.1 0.3 3 20 544 561 543 563 0.91
9 16 0.015 0.91 10.4 0.8 1 23 615 638 615 638 0.94
10 16 0.34 21 6.1 0.6 2 23 676 698 675 698 0.95
11 16 0.0034 0.21 12.4 1.0 2 23 734 756 733 756 0.95
12 16 0.00026 0.016 16.0 1.0 1 23 772 794 772 794 0.95
13 16 4.7e-06 0.00029 21.4 0.8 1 23 800 822 800 822 0.99
14 16 4.7e-07 2.9e-05 24.6 2.6 1 23 828 850 828 850 0.98
15 16 0.01 0.64 10.9 4.6 1 23 856 878 856 878 0.97
16 16 0.055 3.4 8.6 0.2 1 22 884 905 884 908 0.90

Sequence Information

Coding Sequence
atgcTTTTGTCGTCAATTTGCAGAACATGCGATGTTAAAAAGACACGGCATCTTAAATTGCATGAGTTGAATTCGCGCGCTAGCAGACATGAGAAGACTCTATCGGAACTGCTTATCGAGTTGACCAGAATTGATGTCTGTCACAGTGTTGAGCCGAATAAACAACTGCCACAACATTTATGCGGCTATTGTGCAAGTAAAATCGAAGATGCCTACGAATTTATTGTGCAGGCCAGAGAAGCAAATGCGCAGCTGTTGGCGTGTCTTAATGAAAACCGCATTAGAGACTCAGCAGCTGCAGCGAAAAGTTTGCCTAGCGAAGATTCTATGCAGCAATCGAATTGTTCAGTAGAACTCTGGGAAGTGAAGATTGAAGTGGACGCGGAAAATGTGGTAGAAGCAGAGCTTGATAGTAGTGACCATGAGGAATATGATGAACGCTTAGATCCTTTGGTTGCAGAGAATTCTACAGATATAAAATGTGAAGAGCAGCATGATAGCACCAGTGAAGATGAAGTTGATGATTTGCCGCTGGCGTCACGTAAAACTGCAGAACATGCAAAGCAACCAAAATCAACGACGCCGAAAGTAATTGATGCTAAAGCTAAGGACAACACACATGCGTACAAGTGCGATAAATGTGGAAAGTCCTATCTACGTCCAAAGAATTTGCAAGCGCATATGCGCACACACAACGAAGATAATAAATCCATGCGCTCTACAAATCTCTGCGAGCAACGCAAAGTCAAAGATATCGATGTCAATCTGTGCAAACCCAATGGCTGTAAACTAATACAGTGCATGATTTGTCTGCGCAAATTTTCGAAATTCTCCGAACTGCGGAGCCATTTGCAGGAACATGCCACAACGCCAATAACTTTTGATACACGTACGGAAACACTGGATGAAATCGGTAAATCTTTCCATGTCTACTCGAAGCAAGCATCACATTTGGCGGCACGCATTAGAAGGGACCTTACTGATGGCTGCTATGCGCACTATTACTCAATAACTAATGAGGTTGGCTATGAACTCAGTTTGGATAGCTCAGAAACGGAGAGTGACAATGAGGCGGATAATGACGACTCCACGTTTAAGAACGTGCGACGTACCAAACGTAAATATGGTTGCGATTTATGTAAAGTGTCGTTTTTGCGCAAATATCAACTCTTGGAACATCAGTTGCAGGCACATAGCTGGCTGGAGGCACAGCATGTTTGCGCACGTTGCGATGTACGCTTTGTAAACGAGCGTCTGTTGACGCACCATCACAAGTCGTTGTGTAAAAATACGAAGAAACGTTTTCTGTGCAATAAGTGTCCACAGCGTTTCCGCTGGAAGCATAATTACCGCGCACACCTTAAGAATCATCGTGTCAAGGATCAAACTTTCGCCTGTTCGGAGTGTGAACGTGTTTACGACGACAAAAAGTCTTTAACAATACACATGCTGTCATATCATGCCGATGCTTCCAAATTGCTGCCCTGCAATTGGTGTAGTCGTAAATTTTACCGTAGAGATTATCTGCTGAAGCATTTAAAGCGTCATGGTCTGGCGGAGCAGGATCTACCGCTTGCTGAGACATTACTTGCGGCAACTTCAAAAGCGAATGGTGCGAAACAGGCATGCTGCAAAGTTTGCAACGAGCAATTTGCGAGCGTTGCTGCGTTACGTGACCATTTTGCAACAGAAATTGAGCTTCCACACTCAGTACCTCACAGTTATGATACACTAGCAAACTATTCAATAGTAAATGAATCCGGCTATGAATTACATATTGACGATTCGGAGACGGACGAAGAAACGCCTACAAACggcagaaataataaaagtagGGCAACATATAGTTGCGATCTCTGTCAGGTAGTCTGCGGCCGTAAATTTGAATTGATGCAACATCAGCTTGCAATGCATCGTTTCGAAACACTGCCACATGCCTGCGataattgtatatttaaaactgtttcaagcGATTTGCTTGTGCATCATAAACAAACGCAATGCTTGAATACAGAGAAGCAAATACAGTGCAATAAGTGCTCCTTTAAATTCATGTGGCCAGAAAATTTGGTATTACACAAACGCTTACAGCACGGCGAAGAAATTGAGTTACAAAGTAATGTACAAGAAGAGGACGAAAGCAAAACTGCCAACAGCAGCAAGGAAATATTGACAGATCAAGCTACGAAAAAGCTACTGCAATGCCCACACTGCGATCGCACATATCTACTGCAATCCTTTTTAAACAATCACATACGAGATGTGCATGTTGATGACAATcgaaaaagaaagcaaaaagaagCGGAACGTAAGTTCCTTTGTTCACTTTGTGGCATAGAGACGCATACATCCTCGAATCTAGTGATACACATGCGCCGGCACACCGGCGAAAAGCCATTCAAATGCAATGAGTGTAATATGGGTTTCATACGGCGTACTGAGCTGATAATCCATCAACGGCGACATACTGGTGAACGTCCATTCCATTGTACCGTCTGCGGTAAGGATTTTGCGCGTTCGGACAAACTAAAGCGGCACATGTTGACGCATAGCGGCTTGAAGCCACATAAATGTACTTTCTGCGAGAAGATGTACAGATATACAAAGGATCTGAAGCTGCACCTGCTGCAACACACTGGTGAAACGCCTTTCGAGTGTGGCACTTGCGGCGAGCGATTTCTACAAAATACTGCGATGGAGAAACATCGCATAATGCGTGGACATTTTGATgaacctaaataa
Protein Sequence
MLLSSICRTCDVKKTRHLKLHELNSRASRHEKTLSELLIELTRIDVCHSVEPNKQLPQHLCGYCASKIEDAYEFIVQAREANAQLLACLNENRIRDSAAAAKSLPSEDSMQQSNCSVELWEVKIEVDAENVVEAELDSSDHEEYDERLDPLVAENSTDIKCEEQHDSTSEDEVDDLPLASRKTAEHAKQPKSTTPKVIDAKAKDNTHAYKCDKCGKSYLRPKNLQAHMRTHNEDNKSMRSTNLCEQRKVKDIDVNLCKPNGCKLIQCMICLRKFSKFSELRSHLQEHATTPITFDTRTETLDEIGKSFHVYSKQASHLAARIRRDLTDGCYAHYYSITNEVGYELSLDSSETESDNEADNDDSTFKNVRRTKRKYGCDLCKVSFLRKYQLLEHQLQAHSWLEAQHVCARCDVRFVNERLLTHHHKSLCKNTKKRFLCNKCPQRFRWKHNYRAHLKNHRVKDQTFACSECERVYDDKKSLTIHMLSYHADASKLLPCNWCSRKFYRRDYLLKHLKRHGLAEQDLPLAETLLAATSKANGAKQACCKVCNEQFASVAALRDHFATEIELPHSVPHSYDTLANYSIVNESGYELHIDDSETDEETPTNGRNNKSRATYSCDLCQVVCGRKFELMQHQLAMHRFETLPHACDNCIFKTVSSDLLVHHKQTQCLNTEKQIQCNKCSFKFMWPENLVLHKRLQHGEEIELQSNVQEEDESKTANSSKEILTDQATKKLLQCPHCDRTYLLQSFLNNHIRDVHVDDNRKRKQKEAERKFLCSLCGIETHTSSNLVIHMRRHTGEKPFKCNECNMGFIRRTELIIHQRRHTGERPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTFCEKMYRYTKDLKLHLLQHTGETPFECGTCGERFLQNTAMEKHRIMRGHFDEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-